.gitignore
.pre-commit-config.yaml
CONTRIBUTING.md
LICENSE.txt
README.md
mammal.png
mammal_preview_2.pdf
pyproject.toml
.github/ISSUE_TEMPLATE/---bug-report.md
.github/ISSUE_TEMPLATE/---feature-request.md
.github/ISSUE_TEMPLATE/---question.md
.github/workflows/github-actions.yml
.github/workflows/python-publish.yml
biomed_multi_alignment.egg-info/PKG-INFO
biomed_multi_alignment.egg-info/SOURCES.txt
biomed_multi_alignment.egg-info/dependency_links.txt
biomed_multi_alignment.egg-info/requires.txt
biomed_multi_alignment.egg-info/top_level.txt
mammal/__init__.py
mammal/keys.py
mammal/lora.py
mammal/losses.py
mammal/lr_schedulers.py
mammal/main_finetune.py
mammal/metrics.py
mammal/model.py
mammal/task.py
mammal/examples/carcinogenicity/__init__.py
mammal/examples/carcinogenicity/config.yaml
mammal/examples/carcinogenicity/main_infer.py
mammal/examples/carcinogenicity/pl_data_module.py
mammal/examples/carcinogenicity/task.py
mammal/examples/carcinogenicity/data/carcinogens_lagunin.tab
mammal/examples/dti_bindingdb_kd/__init__.py
mammal/examples/dti_bindingdb_kd/config.yaml
mammal/examples/dti_bindingdb_kd/main_infer.py
mammal/examples/dti_bindingdb_kd/pl_data_module.py
mammal/examples/dti_bindingdb_kd/task.py
mammal/examples/protein_solubility/__init__.py
mammal/examples/protein_solubility/config.yaml
mammal/examples/protein_solubility/main_infer.py
mammal/examples/protein_solubility/pl_data_module.py
mammal/examples/protein_solubility/task.py
mammal/examples/tests/test_drug_carcinogenicity_classification.py
mammal/examples/tests/test_dti_bindingdb_kd.py
mammal/examples/tests/test_main_finetune.py
mammal/examples/tests/test_protein_solubility_prediction.py
mammal/examples/tests/test_simple_inference.py
tutorials/advanced_create_new_task.ipynb