.coveragerc
.gitignore
LICENSE
README.md
ROADMAP.md
environment.yaml
pyproject.toml
setup.cfg
setup.py
.github/workflows/python-package.yml
.github/workflows/python-publish.yml
mrfifo/__init__.py
mrfifo/contrib.py
mrfifo/fast_loops.c
mrfifo/fast_loops.pyx
mrfifo/parallel.py
mrfifo/parts.py
mrfifo/plumbing.py
mrfifo/util.py
mrfifo.egg-info/PKG-INFO
mrfifo.egg-info/SOURCES.txt
mrfifo.egg-info/dependency_links.txt
mrfifo.egg-info/not-zip-safe
mrfifo.egg-info/requires.txt
mrfifo.egg-info/top_level.txt
test_data/simple.txt
test_data/simple.txt.gz
test_data/tiny_test.bam
tests/test_cy.py