LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
mavenn/__init__.py
mavenn.egg-info/PKG-INFO
mavenn.egg-info/SOURCES.txt
mavenn.egg-info/dependency_links.txt
mavenn.egg-info/not-zip-safe
mavenn.egg-info/requires.txt
mavenn.egg-info/top_level.txt
mavenn/examples/.DS_Store
mavenn/examples/__init__.py
mavenn/examples/datafiles/.DS_Store
mavenn/examples/datafiles/sort_seq/.DS_Store
mavenn/examples/datafiles/sort_seq/full-wt/.DS_Store
mavenn/examples/datasets/ace2rbd_data.csv.gz
mavenn/examples/datasets/gb1_data.csv.gz
mavenn/examples/datasets/mpsa_data.csv.gz
mavenn/examples/datasets/mpsa_replicate_data.csv.gz
mavenn/examples/datasets/sortseq_data.csv.gz
mavenn/examples/datasets/ace2rbd/ace2rbd.dna
mavenn/examples/datasets/ace2rbd/ace2rbd.pdf
mavenn/examples/datasets/ace2rbd/ace2rbd_data.csv.gz
mavenn/examples/datasets/ace2rbd/ace2rbd_model.h5
mavenn/examples/datasets/ace2rbd/ace2rbd_model.pickle
mavenn/examples/datasets/ace2rbd/analyze_ace2rbd.ipynb
mavenn/examples/datasets/ace2rbd/make_ace2rbd_dataset.ipynb
mavenn/examples/datasets/ace2rbd/tmp.txt
mavenn/examples/datasets/ace2rbd/urn_mavedb_00000044-a-2_scores.csv
mavenn/examples/datasets/gb1/GB1_test_data.csv
mavenn/examples/datasets/gb1/gb1_intrinsic_info.ipynb
mavenn/examples/datasets/gb1/make_gb1_dataset.ipynb
mavenn/examples/datasets/gb1/oslon_data_double_mutants_ambler.csv
mavenn/examples/datasets/gb1/oslon_data_single_mutants_ambler.csv
mavenn/examples/datasets/gb1/test_gb1_dataset_sizes.ipynb
mavenn/examples/datasets/mavedb/UBE2I_DMS-BarSeq/dataset.csv.gz
mavenn/examples/datasets/mavedb/UBE2I_DMS-BarSeq/make_dataset.ipynb
mavenn/examples/datasets/mavedb/UBE2I_DMS-BarSeq/urn_mavedb_00000001-a-2_scores.csv
mavenn/examples/datasets/mpsa/make_mpsa_dataset.ipynb
mavenn/examples/datasets/mpsa/make_mpsa_replicate_dataset.ipynb
mavenn/examples/datasets/mpsa/mpsa_intrinsic_info.ipynb
mavenn/examples/datasets/sort_seq/make_sortseq_dataset.ipynb
mavenn/examples/datasets/sort_seq/full-wt/bin_counts.txt
mavenn/examples/datasets/sort_seq/full-wt/full-wt-sort_seq.csv
mavenn/examples/datasets/sort_seq/full-wt/rnap_sequences.txt
mavenn/examples/demos/gb1_ge_evaluation.png
mavenn/examples/demos/gb1_ge_evaluation.py
mavenn/examples/demos/mpsa_ge_training.png
mavenn/examples/demos/mpsa_ge_training.py
mavenn/examples/demos/sortseq_mpa_visualization.py
mavenn/examples/models/.DS_Store
mavenn/examples/models/20.10.14_test_seed.ipynb
mavenn/examples/models/gb1_ge_additive.h5
mavenn/examples/models/gb1_ge_additive.pickle
mavenn/examples/models/gb1_ge_blackbox.h5
mavenn/examples/models/gb1_ge_blackbox.pickle
mavenn/examples/models/mpsa_ge_additive.h5
mavenn/examples/models/mpsa_ge_additive.pickle
mavenn/examples/models/mpsa_ge_blackbox.h5
mavenn/examples/models/mpsa_ge_blackbox.pickle
mavenn/examples/models/mpsa_ge_neighbor.h5
mavenn/examples/models/mpsa_ge_neighbor.pickle
mavenn/examples/models/mpsa_ge_pairwise.h5
mavenn/examples/models/mpsa_ge_pairwise.pickle
mavenn/examples/models/sortseq_mpa_additive.h5
mavenn/examples/models/sortseq_mpa_additive.pickle
mavenn/examples/models/sortseq_mpa_blackbox.h5
mavenn/examples/models/sortseq_mpa_blackbox.pickle
mavenn/examples/models/sortseq_mpa_visualization.png
mavenn/examples/models/train_gb1_ge_additive.ipynb
mavenn/examples/models/train_gb1_ge_blackbox.ipynb
mavenn/examples/models/train_mpsa_ge_additive.ipynb
mavenn/examples/models/train_mpsa_ge_blackbox.ipynb
mavenn/examples/models/train_mpsa_ge_neighbor.ipynb
mavenn/examples/models/train_mpsa_ge_pairwise.ipynb
mavenn/examples/models/train_sortseq_mpa_additive.ipynb
mavenn/examples/models/train_sortseq_mpa_blackbox.ipynb
mavenn/examples/models/.ipynb_checkpoints/train_gb1_ge_additive-checkpoint.ipynb
mavenn/examples/models/.ipynb_checkpoints/train_mpsa_ge_pairwise-checkpoint.ipynb
mavenn/examples/models/.ipynb_checkpoints/train_sortseq_mpa_additive-checkpoint.ipynb
mavenn/examples/other/GB1_linear_model.h5
mavenn/examples/other/full-0.csv
mavenn/examples/other/full-0.h5
mavenn/examples/other/full-150.csv
mavenn/examples/other/full-150.h5
mavenn/examples/other/full-500.csv
mavenn/examples/other/full-500.h5
mavenn/examples/other/full-wt.csv
mavenn/examples/other/full-wt.h5
mavenn/examples/tutorials/.DS_Store
mavenn/examples/tutorials/fig_tutorial1_fig1.png
mavenn/examples/tutorials/fig_tutorial1_fig2.png
mavenn/examples/tutorials/gb1_ge_evaluation.png
mavenn/examples/tutorials/mpsa_ge_training.png
mavenn/examples/tutorials/sortseq_mpa_visualization.png
mavenn/examples/tutorials/tutorial_0_built-in_examples.ipynb
mavenn/examples/tutorials/tutorial_1_mpsa_analysis.ipynb
mavenn/examples/tutorials/tutorial_1_mpsa_ge_pairwise.h5
mavenn/examples/tutorials/tutorial_1_mpsa_ge_pairwise.pickle
mavenn/examples/tutorials/.ipynb_checkpoints/tutorial_0_built-in_examples-checkpoint.ipynb
mavenn/examples/tutorials/.ipynb_checkpoints/tutorial_1_mpsa_analysis-checkpoint.ipynb
mavenn/src/.DS_Store
mavenn/src/__init__.py
mavenn/src/_npeet.py
mavenn/src/entropy.py
mavenn/src/error_handling.py
mavenn/src/examples.py
mavenn/src/mavedb.py
mavenn/src/model.py
mavenn/src/regression_types.py
mavenn/src/reshape.py
mavenn/src/utils.py
mavenn/src/validate.py
mavenn/src/visualization.py
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mavenn/src/dev/__init__.py
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mavenn/src/layers/__init__.py
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mavenn/tests/.DS_Store
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mavenn/tests/specific_tests.py
mavenn/tests/testing_utils.py
mavenn/tests/__pycache__/__init__.cpython-36.pyc
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