Metadata-Version: 2.1
Name: LDtoolsets
Version: 0.0.1
Summary: Modules for LD computing, liftover and region extraction
Home-page: https://github.com/changebio/LDtools/tree/master/
Author: YinHuang
Author-email: changebio@yeah.net
License: Apache Software License 2.0
Description: # Scalable pipeline for computing LD matrix in big sample phenotype
        
        
        
        ### 4 modules
        - Genodata
        - Sumstats
        - Liftover
        - LDmatrix
        
        ## Install
        
        `pip install LDtools`
        
        ## How to use
        
        ```python
        lf = Liftover('hg38','hg19')
        ```
        
        ```python
        vcf ='/home/yh3455/Github/SEQLinkage/MWE/small_sample_ii_coding.vcf.gz'
        ```
        
        ```python
        lf.vcf_liftover(vcf)
        ```
        
Keywords: LD computing,Liftover,Region extraction
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: OSI Approved :: Apache Software License
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Provides-Extra: dev
