Metadata-Version: 2.1
Name: cgap-higlass-data
Version: 0.1.3
Summary: Data file generation for CGAP's Higlass browsers
Home-page: https://github.com/dbmi-bgm/higlass-data
License: MIT
Author: Alexander Veit
Author-email: alexander_veit@hms.harvard.edu
Requires-Python: >=3.8,<3.11
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Dist: PyVCF3 (>=1.0.3,<2.0.0)
Requires-Dist: click (>=8.1.3,<9.0.0)
Requires-Dist: negspy (>=0.2.24,<0.3.0)
Requires-Dist: pandas (>=1.4.3,<2.0.0)
Project-URL: Repository, https://github.com/dbmi-bgm/higlass-data
Description-Content-Type: text/markdown


# higlass-data
Package that creates data files for CGAP's Higlass browsers

## Installation

Make sure `poetry` is installed on your system. Clone the repository and run `poetry install`

## Run a script

```
# -i input file path
# -o output file path
# -q Shows logs when set to False
poetry run create-cohort-vcf -i ./PATH/input.vcf -o ./PATH/input.multires.vcf -q False

```



