appdirs>=1.4.3
attrs>=19.3.0
biopython>=1.76
configargparse>=1.1
datrie>=0.8.2
decorator==4.4.2
docopt>=0.6.2
docutils>=0.16
gitdb==4.0.2
gitpython>=3.1.0
importlib-metadata>=1.5.0
ipython-genutils>=0.2.0
jsonschema>=3.2.0
jupyter-core>=4.6.3
nbformat==5.0.4
newick>=1.0.0
numpy>=1.18.2
psutil>=5.7.0
pyrsistent>=0.15.7
pyyaml>=5.4
ratelimiter>=1.2.0.post0
smmap>=3.0.1
snakemake>=5.11.1
toposort>=1.5
traitlets>=4.3.3
wrapt>=1.12.1
zipp>=3.1.0
