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CHANGELOG.txt
CONTRIBUTORS.txt
LICENSE.txt
Makefile
PLAN
README.md
TODO
requirements.txt
setup.py
.github/workflows/draft-pdf.yml
benchmarks/Comparison_SQL_Fastsubtrees_Subtree_Values.txt
benchmarks/Fastsubtrees_Attribute_GCcontent.txt
benchmarks/Fastsubtrees_Attribute_GenomeSize.txt
benchmarks/Fastsubtrees_Attribute_Values_bennchmark.txt
benchmarks/Fastsubtrees_benchmark.txt
benchmarks/SQL_benchmark.txt
bin/fastsubtrees-add-subtree
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fastsubtrees/error.py
fastsubtrees/tree.py
fastsubtrees.egg-info/PKG-INFO
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fastsubtrees.egg-info/top_level.txt
fastsubtrees/ids_modules/ids_from_database.py
fastsubtrees/ids_modules/ids_from_tabular_file.py
genomes-attributes-viewer/.gitignore
genomes-attributes-viewer/README.md
genomes-attributes-viewer/accession_taxid_attribute.tsv.gz
genomes-attributes-viewer/app.py
genomes-attributes-viewer/generate_attribute_file.py
genomes-attributes-viewer/requirements.txt
genomes-attributes-viewer/run.py
ntmirror/.gitignore
ntmirror/AUTHORS.txt
ntmirror/CHANGELOG.txt
ntmirror/CITATION.cff
ntmirror/LICENSE.txt
ntmirror/Makefile
ntmirror/README.md
ntmirror/requirements.txt
ntmirror/setup.py
ntmirror/bin/ntmirror-dbload
ntmirror/bin/ntmirror-download
ntmirror/bin/ntmirror-extract-subtree
ntmirror/docs/user_manual.md
ntmirror/ntmirror/__init__.py
ntmirror/ntmirror/dbloader_mysql.py
ntmirror/ntmirror/dbloader_sqlalchemy.py
ntmirror/ntmirror/dbloader_sqlwriter.py
ntmirror/ntmirror/dbschema.py
ntmirror/ntmirror/downloader.py
ntmirror/ntmirror/scripts_helper.py
ntmirror/tests/.gitignore
ntmirror/tests/config.yaml.example
ntmirror/tests/conftest.py
ntmirror/tests/test_dbload_api.py
ntmirror/tests/test_dbload_cli.py
ntmirror/tests/test_downloader_api.py
ntmirror/tests/test_downloader_cli.py
ntmirror/tests/testdata/README.md
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