AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
ope/VERSION
ope/__init__.py
ope/cli.py
ope/parallel.py
ope/utils.py
ope.egg-info/PKG-INFO
ope.egg-info/SOURCES.txt
ope.egg-info/dependency_links.txt
ope.egg-info/entry_points.txt
ope.egg-info/not-zip-safe
ope.egg-info/requires.txt
ope.egg-info/top_level.txt
ope/io/__init__.py
ope/io/base.py
ope/io/gff3.py
ope/io/hmmer.py
ope/io/infernal.py
ope/io/maf.py
ope/io/transdecoder.py
tests/__init__.py
tests/conftest.py
tests/test_parallel.py
tests/utils.py
tests/test-data/query.100.pep.fa