Metadata-Version: 1.2
Name: ope
Version: 0.5
Summary: Do you need to run tools on FASTA files with gnu parallel, and then parse the results? You need prescription strength Fuckitall!
Home-page: https://github.com/camillescott/ope
Author: Camille Scott
Author-email: cswel@ucdavis.edu
License: MIT license
Description: =========
        ope
        =========
        
        
        .. image:: https://img.shields.io/pypi/v/ope.svg
                :target: https://pypi.python.org/pypi/ope
        
        .. image:: https://img.shields.io/travis/camillescott/ope.svg
                :target: https://travis-ci.org/camillescott/ope
        
        .. image:: https://readthedocs.org/projects/ope/badge/?version=latest
                :target: https://ope.readthedocs.io/en/latest/?badge=latest
                :alt: Documentation Status
        
        
        Abstracts away running `gnu-parallel` on tools with FASTA input and provides parsers for some common
        formats produced by said tools.
        
        Example usage::
        
           ope parallel -j 4 [query.pep.fa] hmmscan --domtblout [results.tbl] -E 1e-05 -o /dev/null /store/biodb/Pfam-A.hmm /dev/stdin
        
        Hence, the only `gnu-parallel` flag one needs to worry about is `-j` for the number of cores to use.
        Note that you also need to set the input in the actual tool invocation as `/dev/stdin`.
        
        * Free software: MIT license
        * Documentation: https://ope.readthedocs.io.
        
        
        Features
        --------
        
        * TODO
        
        Credits
        -------
        
        This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.
        
        .. _Cookiecutter: https://github.com/audreyr/cookiecutter
        .. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
        
        
        =======
        History
        =======
        
        0.1.0 (2019-12-11)
        ------------------
        
        * First release on PyPI.
        
Keywords: ope
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.5
