.gitignore
.travis.yml
LICENSE.lesser
MANIFEST.in
README.md
install_local_java.sh
requirements.txt
setup.py
test.sh
test3.sh
examples/IM.channel.nml
examples/KConductance.channel.nml
examples/Kd.channel.nml
examples/LEMS_NML2_Ex5_DetCell.xml
examples/LEMS_NML2_Ex9_FN.xml
examples/LeakConductance.channel.nml
examples/LeakConductance.mod
examples/NML2_SingleCompHHCell.nml
examples/NaConductance.channel.nml
examples/NaConductance2.mod
examples/README.md
examples/Vm_plot.py
examples/analyseNaMod.sh
examples/analyseNaNml2.sh
examples/analyseNaNml2_iv.sh
examples/component_evaluation.py
examples/create_new_lems_file.py
examples/dt_dependence.py
examples/export_neuroml1.py
examples/export_neuroml2.py
examples/generate_if_curve.py
examples/quick_plot.py
examples/readAnnots.py
examples/reload_data.py
examples/run_jneuroml_plot_matplotlib.py
examples/test.hoc
examples/tuneHHCell.py
examples/tuneHHCell.sh
examples/units.py
examples/results/README.md
examples/test/hinf_NaConductance.dat
examples/test/htau_NaConductance.dat
examples/test/minf_NaConductance.dat
examples/test/mtau_NaConductance.dat
examples/test/ninf_Gran_H_98.dat
examples/test/ntau_Gran_H_98.dat
examples/test_data/EGL-36.channel.nml
examples/test_data/HHCellNetwork.net.nml
examples/test_data/LEMS_HH_Simulation.xml
examples/test_data/NML2_FullCell.nml
examples/test_data/NML2_SimpleIonChannel.nml
examples/test_data/hhcell.cell.nml
examples/test_data/kChan.channel.nml
examples/test_data/naChan.channel.nml
examples/test_data/passiveChan.channel.nml
examples/test_data/simplenet.nml
examples/test_data/simplenet.py
examples/tune/Ca_conc.nml
examples/tune/Ca_pyr.channel.nml
examples/tune/Kahp_pyr.channel.nml
examples/tune/Kdr_pyr.channel.nml
examples/tune/LEMS_OnePyr.xml
examples/tune/LeakConductance_pyr.channel.nml
examples/tune/Na_pyr.channel.nml
examples/tune/OnePyr.net.nml
examples/tune/README.md
examples/tune/Selection_817.jpg
examples/tune/pyr_4_sym.cell.nml
examples/tune/tunePyr.py
examples/tune/temp/README.md
pyNeuroML.egg-info/PKG-INFO
pyNeuroML.egg-info/SOURCES.txt
pyNeuroML.egg-info/dependency_links.txt
pyNeuroML.egg-info/entry_points.txt
pyNeuroML.egg-info/requires.txt
pyNeuroML.egg-info/top_level.txt
pyneuroml/__init__.py
pyneuroml/pynml.py
pyneuroml/analysis/ChannelDensityPlot.py
pyneuroml/analysis/ChannelHelper.py
pyneuroml/analysis/ChannelInfo_TEMPLATE.html
pyneuroml/analysis/ChannelInfo_TEMPLATE.md
pyneuroml/analysis/LEMS_Test_TEMPLATE.xml
pyneuroml/analysis/NML2ChannelAnalysis.py
pyneuroml/analysis/__init__.py
pyneuroml/lems/LEMSSimulation.py
pyneuroml/lems/LEMS_TEMPLATE.xml
pyneuroml/lems/__init__.py
pyneuroml/lib/jNeuroML-0.8.3-jar-with-dependencies.jar
pyneuroml/neuron/__init__.py
pyneuroml/neuron/mview_neuroml1.hoc
pyneuroml/neuron/mview_neuroml2.hoc
pyneuroml/neuron/nrn_export_utils.py
pyneuroml/neuron/analysis/HHanalyse.py
pyneuroml/neuron/analysis/__init__.py
pyneuroml/neuron/mod/README.md
pyneuroml/neuron/mod/TEMPLATE.channel.nml
pyneuroml/neuron/mod/parse_mod_file.py
pyneuroml/plot/PlotSpikes.py
pyneuroml/plot/__init__.py
pyneuroml/plot/generate_test_data.py
pyneuroml/plot/test.py
pyneuroml/povray/MakeMovie.py
pyneuroml/povray/NeuroML2ToPOVRay.py
pyneuroml/povray/OverlaySimulation.py
pyneuroml/povray/__init__.py
pyneuroml/tune/NeuroMLController.py
pyneuroml/tune/NeuroMLSimulation.py
pyneuroml/tune/NeuroMLTuner.py
pyneuroml/tune/__init__.py