#!/Users/everettschlawin/miniconda3/envs/m1py3p8/bin/python
import sys
from jtow import auto_jtow
import argparse
import pdb

parser = argparse.ArgumentParser(description='Run ROEBA correction.')
parser.add_argument('inFile', metavar='F', type=str,
                    help='The input file. Or, in quotes a wildcard search for files')
parser.add_argument('--iterations', metavar='I', type=int, default=1,
                    help='How many iterations of stage 1 to run to update background mask.')
# parser.add_argument('--outDir', default='.',
#                     help='The output directory')
#

args = parser.parse_args()


auto_jtow.run_auto_jtow(searchString=args.inFile,iterations=args.iterations)
#
# pdb.set_trace()
