.gitattributes
.gitignore
LICENSE
Makefile
README.md
fig1.png
make.bat
requirements.txt
setup.py
analysis/scRNA/single_cell_analysis_demo.ipynb
analysis/scRNA/data/FACS_cellontology.membership
analysis/scRNA/data/FACS_metadata.tsv
analysis/scRNA/data/cl-basic.obo
analysis/scRNA/data/cl-basic_is_a_only.tab
analysis/scRNA/data/summary_jaccard_comm2ref.tsv
analysis/scRNA/data/summary_jaccard_ref2comm.tsv
analysis/scRNA/data/test_FACS.nodes
docs/Makefile
docs/api.rst
docs/conf.py
docs/hidef_finder.rst
docs/index.rst
docs/make.bat
docs/requirements.txt
docs/test.ipynb
docs/utils.rst
docs/weaver.rst
docs/img/fig1.png
docs/img/organize_1.png
docs/img/organize_2.png
docs/img/organize_3.png
docs/img/organize_4.png
docs/img/organize_5.png
docs/tutorial/community.rst
docs/tutorial/index.rst
docs/tutorial/interactive.rst
docs/tutorial/organize.rst
examples/BioPlex.edges
examples/BioPlex.gml
examples/BioPlex.nodes
examples/BioPlex.tsv
examples/BioPlex.weaver
examples/BioPlex_multiplex_test1.edges
examples/BioPlex_multiplex_test1.gml
examples/BioPlex_multiplex_test1.nodes
examples/BioPlex_multiplex_test2.edges
examples/BioPlex_multiplex_test2.gml
examples/BioPlex_multiplex_test2.nodes
examples/BioPlex_sub1.tsv
examples/BioPlex_sub2.tsv
examples/CCRCC_graph.tsv
examples/CCRCC_prot.tsv
examples/test.sh
examples/test2.sh
hidef/__init__.py
hidef/dash_utils.py
hidef/hidef_finder.py
hidef/logger.py
hidef/utils.py
hidef/weaver.py
hidef.egg-info/PKG-INFO
hidef.egg-info/SOURCES.txt
hidef.egg-info/dependency_links.txt
hidef.egg-info/requires.txt
hidef.egg-info/top_level.txt
tests/__init__.py
tests/testutils.py