six
numpy>=1.9
scipy>=0.16
pandas
h5py>=2.5
click>=7
cytoolz<0.11
multiprocess
pyfaidx
pypairix
asciitree
pyyaml
simplejson

[all]
biopython<1.77
dask[array,dataframe]
ipytree
psutil
pysam

[docs]
Sphinx>=1.6
sphinx-rtd-theme
numpydoc
recommonmark
m2r
mock
six
multiprocess
click
asciitree
pyyaml

[tests]
pytest
mock
pytest-flake8
pytest-cov
codecov
