.gitignore
LICENSE
README.md
pyproject.toml
.sourcehut/arch.yml
config/labxpipe.json
config/labxpipe_trackhub.json
config/pipelines/chip_seq.json
config/pipelines/mrna_seq.json
config/pipelines/mrna_seq_cufflinks.json
config/pipelines/mrna_seq_no_db.json
config/pipelines/mrna_seq_with_plotting.json
img/logo.svg
src/labxpipe/__init__.py
src/labxpipe/parallel_helpers.py
src/labxpipe/trackhub.py
src/labxpipe/utils.py
src/labxpipe.egg-info/PKG-INFO
src/labxpipe.egg-info/SOURCES.txt
src/labxpipe.egg-info/dependency_links.txt
src/labxpipe.egg-info/entry_points.txt
src/labxpipe.egg-info/requires.txt
src/labxpipe.egg-info/top_level.txt
src/labxpipe/interfaces/__init__.py
src/labxpipe/interfaces/if_exe_bowtie2.py
src/labxpipe/interfaces/if_exe_cufflinks.py
src/labxpipe/interfaces/if_exe_geneabacus.py
src/labxpipe/interfaces/if_exe_readknead.py
src/labxpipe/interfaces/if_exe_samtools.py
src/labxpipe/interfaces/if_exe_star.py
src/labxpipe/steps/__init__.py
src/labxpipe/steps/bowtie2.py
src/labxpipe/steps/cleaning.py
src/labxpipe/steps/cufflinks.py
src/labxpipe/steps/geneabacus.py
src/labxpipe/steps/readknead.py
src/labxpipe/steps/samtools_uniquify.py
src/labxpipe/steps/star.py
src/labxpipe_scripts/__init__.py
src/labxpipe_scripts/lxpipe.py
src/labxpipe_scripts/lxpipe_demultiplex.py
src/labxpipe_scripts/lxpipe_generate.py
src/labxpipe_scripts/lxpipe_merge_count.py
src/labxpipe_scripts/lxpipe_profile.py
src/labxpipe_scripts/lxpipe_report.py
src/labxpipe_scripts/lxpipe_run.py
src/labxpipe_scripts/lxpipe_trackhub.py