HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
galaxy/__init__.py
galaxy/app.py
galaxy/config_watchers.py
galaxy/main.py
galaxy/project_galaxy_app.py
galaxy/queue_worker.py
galaxy/queues.py
galaxy/version.py
galaxy/actions/__init__.py
galaxy/actions/admin.py
galaxy/actions/library.py
galaxy/forms/__init__.py
galaxy/forms/forms.py
galaxy/jobs/__init__.py
galaxy/jobs/command_factory.py
galaxy/jobs/dynamic_tool_destination.py
galaxy/jobs/handler.py
galaxy/jobs/manager.py
galaxy/jobs/mapper.py
galaxy/jobs/rule_helper.py
galaxy/jobs/stock_rules.py
galaxy/jobs/transfer_manager.py
galaxy/jobs/actions/__init__.py
galaxy/jobs/actions/post.py
galaxy/jobs/rules/__init__.py
galaxy/jobs/runners/__init__.py
galaxy/jobs/runners/chronos.py
galaxy/jobs/runners/cli.py
galaxy/jobs/runners/condor.py
galaxy/jobs/runners/drmaa.py
galaxy/jobs/runners/godocker.py
galaxy/jobs/runners/kubernetes.py
galaxy/jobs/runners/local.py
galaxy/jobs/runners/pbs.py
galaxy/jobs/runners/pulsar.py
galaxy/jobs/runners/slurm.py
galaxy/jobs/runners/state_handler_factory.py
galaxy/jobs/runners/tasks.py
galaxy/jobs/runners/univa.py
galaxy/jobs/runners/state_handlers/__init__.py
galaxy/jobs/runners/state_handlers/_safe_eval.py
galaxy/jobs/runners/state_handlers/resubmit.py
galaxy/jobs/runners/util/__init__.py
galaxy/jobs/runners/util/env.py
galaxy/jobs/runners/util/external.py
galaxy/jobs/runners/util/kill.py
galaxy/jobs/runners/util/process_groups.py
galaxy/jobs/runners/util/pykube_util.py
galaxy/jobs/runners/util/sudo.py
galaxy/jobs/runners/util/cli/__init__.py
galaxy/jobs/runners/util/cli/factory.py
galaxy/jobs/runners/util/cli/job/__init__.py
galaxy/jobs/runners/util/cli/job/lsf.py
galaxy/jobs/runners/util/cli/job/slurm.py
galaxy/jobs/runners/util/cli/job/slurm_torque.py
galaxy/jobs/runners/util/cli/job/torque.py
galaxy/jobs/runners/util/cli/shell/__init__.py
galaxy/jobs/runners/util/cli/shell/local.py
galaxy/jobs/runners/util/cli/shell/rsh.py
galaxy/jobs/runners/util/condor/__init__.py
galaxy/jobs/runners/util/job_script/__init__.py
galaxy/jobs/splitters/__init__.py
galaxy/jobs/splitters/basic.py
galaxy/jobs/splitters/multi.py
galaxy/managers/__init__.py
galaxy/managers/annotatable.py
galaxy/managers/api_keys.py
galaxy/managers/base.py
galaxy/managers/citations.py
galaxy/managers/cloud.py
galaxy/managers/cloudauthzs.py
galaxy/managers/collections.py
galaxy/managers/collections_util.py
galaxy/managers/configuration.py
galaxy/managers/containers.py
galaxy/managers/context.py
galaxy/managers/datasets.py
galaxy/managers/deletable.py
galaxy/managers/executables.py
galaxy/managers/folders.py
galaxy/managers/hdas.py
galaxy/managers/hdcas.py
galaxy/managers/histories.py
galaxy/managers/history_contents.py
galaxy/managers/interactivetool.py
galaxy/managers/jobs.py
galaxy/managers/lddas.py
galaxy/managers/libraries.py
galaxy/managers/library_datasets.py
galaxy/managers/markdown_parse.py
galaxy/managers/markdown_util.py
galaxy/managers/pages.py
galaxy/managers/ratable.py
galaxy/managers/rbac_secured.py
galaxy/managers/roles.py
galaxy/managers/secured.py
galaxy/managers/sharable.py
galaxy/managers/taggable.py
galaxy/managers/tools.py
galaxy/managers/users.py
galaxy/managers/visualizations.py
galaxy/managers/workflows.py
galaxy/openid/__init__.py
galaxy/openid/openid_manager.py
galaxy/openid/providers.py
galaxy/tool_shed/__init__.py
galaxy/tool_shed/repository_type.py
galaxy/tool_shed/tool_shed_registry.py
galaxy/tool_shed/galaxy_install/__init__.py
galaxy/tool_shed/galaxy_install/install_manager.py
galaxy/tool_shed/galaxy_install/installed_repository_manager.py
galaxy/tool_shed/galaxy_install/tool_migration_manager.py
galaxy/tool_shed/galaxy_install/update_repository_manager.py
galaxy/tool_shed/galaxy_install/datatypes/__init__.py
galaxy/tool_shed/galaxy_install/datatypes/custom_datatype_manager.py
galaxy/tool_shed/galaxy_install/metadata/__init__.py
galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py
galaxy/tool_shed/galaxy_install/migrate/__init__.py
galaxy/tool_shed/galaxy_install/migrate/check.py
galaxy/tool_shed/galaxy_install/migrate/common.py
galaxy/tool_shed/galaxy_install/migrate/versions/0001_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0002_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0003_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0004_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0005_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0006_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0007_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0008_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0009_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0010_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0011_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/0012_tools.py
galaxy/tool_shed/galaxy_install/migrate/versions/__init__.py
galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py
galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py
galaxy/tool_shed/galaxy_install/tool_dependencies/__init__.py
galaxy/tool_shed/galaxy_install/tool_dependencies/env_manager.py
galaxy/tool_shed/galaxy_install/tool_dependencies/recipe/__init__.py
galaxy/tool_shed/galaxy_install/tool_dependencies/recipe/asynchronous_reader.py
galaxy/tool_shed/galaxy_install/tool_dependencies/recipe/env_file_builder.py
galaxy/tool_shed/galaxy_install/tool_dependencies/recipe/install_environment.py
galaxy/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py
galaxy/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
galaxy/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py
galaxy/tool_shed/galaxy_install/tools/__init__.py
galaxy/tool_shed/galaxy_install/tools/data_manager.py
galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py
galaxy/tool_shed/metadata/__init__.py
galaxy/tool_shed/metadata/metadata_generator.py
galaxy/tool_shed/tools/__init__.py
galaxy/tool_shed/tools/data_table_manager.py
galaxy/tool_shed/tools/tool_validator.py
galaxy/tool_shed/util/__init__.py
galaxy/tool_shed/util/basic_util.py
galaxy/tool_shed/util/container_util.py
galaxy/tool_shed/util/hg_util.py
galaxy/tool_shed/util/metadata_util.py
galaxy/tool_shed/util/repository_util.py
galaxy/tool_shed/util/shed_util_common.py
galaxy/tool_shed/util/tool_dependency_util.py
galaxy/tool_shed/util/tool_util.py
galaxy/tools/__init__.py
galaxy/tools/cache.py
galaxy/tools/data_fetch.py
galaxy/tools/errors.py
galaxy/tools/evaluation.py
galaxy/tools/exception_handling.py
galaxy/tools/execute.py
galaxy/tools/recommendations.py
galaxy/tools/repositories.py
galaxy/tools/special_tools.py
galaxy/tools/test.py
galaxy/tools/wrappers.py
galaxy/tools/actions/__init__.py
galaxy/tools/actions/data_manager.py
galaxy/tools/actions/data_source.py
galaxy/tools/actions/history_imp_exp.py
galaxy/tools/actions/metadata.py
galaxy/tools/actions/model_operations.py
galaxy/tools/actions/upload.py
galaxy/tools/actions/upload_common.py
galaxy/tools/data/__init__.py
galaxy/tools/data_manager/__init__.py
galaxy/tools/data_manager/manager.py
galaxy/tools/error_reports/__init__.py
galaxy/tools/expressions/__init__.py
galaxy/tools/expressions/evaluation.py
galaxy/tools/expressions/script.py
galaxy/tools/expressions/util.py
galaxy/tools/filters/__init__.py
galaxy/tools/imp_exp/__init__.py
galaxy/tools/imp_exp/export_history.py
galaxy/tools/imp_exp/unpack_tar_gz_archive.py
galaxy/tools/parameters/__init__.py
galaxy/tools/parameters/basic.py
galaxy/tools/parameters/dataset_matcher.py
galaxy/tools/parameters/dynamic_options.py
galaxy/tools/parameters/grouping.py
galaxy/tools/parameters/history_query.py
galaxy/tools/parameters/input_translation.py
galaxy/tools/parameters/meta.py
galaxy/tools/parameters/sanitize.py
galaxy/tools/parameters/validation.py
galaxy/tools/parameters/wrapped.py
galaxy/tools/parameters/wrapped_json.py
galaxy/tools/search/__init__.py
galaxy/tools/toolbox/__init__.py
galaxy/tools/toolbox/base.py
galaxy/tools/toolbox/integrated_panel.py
galaxy/tools/toolbox/panel.py
galaxy/tools/toolbox/parser.py
galaxy/tools/toolbox/tags.py
galaxy/tools/toolbox/watcher.py
galaxy/tools/toolbox/filters/__init__.py
galaxy/tools/toolbox/lineages/__init__.py
galaxy/tools/toolbox/lineages/factory.py
galaxy/tools/toolbox/lineages/interface.py
galaxy/tools/util/__init__.py
galaxy/tools/util/maf_utilities.py
galaxy/tools/util/galaxyops/__init__.py
galaxy/tours/__init__.py
galaxy/visualization/__init__.py
galaxy/visualization/genomes.py
galaxy/visualization/data_providers/__init__.py
galaxy/visualization/data_providers/basic.py
galaxy/visualization/data_providers/cigar.py
galaxy/visualization/data_providers/genome.py
galaxy/visualization/data_providers/registry.py
galaxy/visualization/data_providers/phyloviz/__init__.py
galaxy/visualization/data_providers/phyloviz/baseparser.py
galaxy/visualization/data_providers/phyloviz/newickparser.py
galaxy/visualization/data_providers/phyloviz/nexusparser.py
galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py
galaxy/visualization/genome/__init__.py
galaxy/visualization/plugins/__init__.py
galaxy/visualization/plugins/config_parser.py
galaxy/visualization/plugins/interactive_environments.py
galaxy/visualization/plugins/plugin.py
galaxy/visualization/plugins/registry.py
galaxy/visualization/plugins/resource_parser.py
galaxy/visualization/plugins/utils.py
galaxy/visualization/tracks/__init__.py
galaxy/webhooks/__init__.py
galaxy/work/__init__.py
galaxy/work/context.py
galaxy/workflow/__init__.py
galaxy/workflow/extract.py
galaxy/workflow/modules.py
galaxy/workflow/render.py
galaxy/workflow/run.py
galaxy/workflow/run_request.py
galaxy/workflow/scheduling_manager.py
galaxy/workflow/steps.py
galaxy/workflow/trs_proxy.py
galaxy/workflow/resources/__init__.py
galaxy/workflow/schedulers/__init__.py
galaxy/workflow/schedulers/core.py
galaxy_app.egg-info/PKG-INFO
galaxy_app.egg-info/SOURCES.txt
galaxy_app.egg-info/dependency_links.txt
galaxy_app.egg-info/entry_points.txt
galaxy_app.egg-info/not-zip-safe
galaxy_app.egg-info/requires.txt
galaxy_app.egg-info/top_level.txt