setup.cfg
setup.py
nnunet/__init__.py
nnunet/configuration.py
nnunet/paths.py
nnunet.egg-info/PKG-INFO
nnunet.egg-info/SOURCES.txt
nnunet.egg-info/dependency_links.txt
nnunet.egg-info/entry_points.txt
nnunet.egg-info/requires.txt
nnunet.egg-info/top_level.txt
nnunet/dataset_conversion/Task017_BeyondCranialVaultAbdominalOrganSegmentation.py
nnunet/dataset_conversion/Task024_Promise2012.py
nnunet/dataset_conversion/Task027_AutomaticCardiacDetectionChallenge.py
nnunet/dataset_conversion/Task029_LiverTumorSegmentationChallenge.py
nnunet/dataset_conversion/Task032_BraTS_2018.py
nnunet/dataset_conversion/Task035_ISBI_MSLesionSegmentationChallenge.py
nnunet/dataset_conversion/Task037_038_Chaos_Challenge.py
nnunet/dataset_conversion/Task040_KiTS.py
nnunet/dataset_conversion/Task043_BraTS_2019.py
nnunet/dataset_conversion/Task055_SegTHOR.py
nnunet/dataset_conversion/Task056_VerSe2019.py
nnunet/dataset_conversion/Task056_Verse_normalize_orientation.py
nnunet/dataset_conversion/Task058_ISBI_EM_SEG.py
nnunet/dataset_conversion/Task059_EPFL_EM_MITO_SEG.py
nnunet/dataset_conversion/Task061_CREMI.py
nnunet/dataset_conversion/Task062_NIHPancreas.py
nnunet/dataset_conversion/Task064_KiTS_labelsFixed.py
nnunet/dataset_conversion/Task065_KiTS_NicksLabels.py
nnunet/dataset_conversion/Task069_CovidSeg.py
nnunet/dataset_conversion/Task075_Fluo_C3DH_A549_ManAndSim.py
nnunet/dataset_conversion/Task076_Fluo_N3DH_SIM.py
nnunet/dataset_conversion/Task089_Fluo-N2DH-SIM.py
nnunet/dataset_conversion/__init__.py
nnunet/evaluation/__init__.py
nnunet/evaluation/add_dummy_task_with_mean_over_all_tasks.py
nnunet/evaluation/add_mean_dice_to_json.py
nnunet/evaluation/collect_results_files.py
nnunet/evaluation/evaluator.py
nnunet/evaluation/metrics.py
nnunet/evaluation/region_based_evaluation.py
nnunet/evaluation/surface_dice.py
nnunet/evaluation/model_selection/__init__.py
nnunet/evaluation/model_selection/collect_all_fold0_results_and_summarize_in_one_csv.py
nnunet/evaluation/model_selection/ensemble.py
nnunet/evaluation/model_selection/figure_out_what_to_submit.py
nnunet/evaluation/model_selection/rank_candidates.py
nnunet/evaluation/model_selection/rank_candidates_StructSeg.py
nnunet/evaluation/model_selection/rank_candidates_cascade.py
nnunet/evaluation/model_selection/summarize_results_in_one_json.py
nnunet/evaluation/model_selection/summarize_results_with_plans.py
nnunet/experiment_planning/DatasetAnalyzer.py
nnunet/experiment_planning/__init__.py
nnunet/experiment_planning/change_batch_size.py
nnunet/experiment_planning/common_utils.py
nnunet/experiment_planning/experiment_planner_baseline_2DUNet.py
nnunet/experiment_planning/experiment_planner_baseline_2DUNet_v21.py
nnunet/experiment_planning/experiment_planner_baseline_3DUNet.py
nnunet/experiment_planning/experiment_planner_baseline_3DUNet_v21.py
nnunet/experiment_planning/nnUNet_convert_decathlon_task.py
nnunet/experiment_planning/nnUNet_plan_and_preprocess.py
nnunet/experiment_planning/summarize_plans.py
nnunet/experiment_planning/utils.py
nnunet/experiment_planning/alternative_experiment_planning/__init__.py
nnunet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_11GB.py
nnunet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_32GB.py
nnunet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_3convperstage.py
nnunet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v22.py
nnunet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v23.py
nnunet/experiment_planning/alternative_experiment_planning/experiment_planner_residual_3DUNet_v21.py
nnunet/experiment_planning/alternative_experiment_planning/normalization/__init__.py
nnunet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_CT2.py
nnunet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_nonCT.py
nnunet/experiment_planning/alternative_experiment_planning/patch_size/__init__.py
nnunet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_mm.py
nnunet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_voxels.py
nnunet/experiment_planning/alternative_experiment_planning/pooling_and_convs/__init__.py
nnunet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_allConv3x3.py
nnunet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_poolBasedOnSpacing.py
nnunet/experiment_planning/alternative_experiment_planning/target_spacing/__init__.py
nnunet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_targetSpacingForAnisoAxis.py
nnunet/experiment_planning/old/__init__.py
nnunet/experiment_planning/old/old_plan_and_preprocess_task.py
nnunet/inference/__init__.py
nnunet/inference/change_trainer.py
nnunet/inference/ensemble_predictions.py
nnunet/inference/predict.py
nnunet/inference/predict_simple.py
nnunet/inference/segmentation_export.py
nnunet/inference/pretrained_models/__init__.py
nnunet/inference/pretrained_models/collect_pretrained_models.py
nnunet/inference/pretrained_models/download_pretrained_model.py
nnunet/network_architecture/__init__.py
nnunet/network_architecture/generic_UNet.py
nnunet/network_architecture/generic_UNet_DP.py
nnunet/network_architecture/generic_modular_UNet.py
nnunet/network_architecture/generic_modular_residual_UNet.py
nnunet/network_architecture/initialization.py
nnunet/network_architecture/neural_network.py
nnunet/network_architecture/custom_modules/__init__.py
nnunet/network_architecture/custom_modules/conv_blocks.py
nnunet/network_architecture/custom_modules/feature_response_normalization.py
nnunet/network_architecture/custom_modules/helperModules.py
nnunet/network_architecture/custom_modules/mish.py
nnunet/postprocessing/__init__.py
nnunet/postprocessing/connected_components.py
nnunet/postprocessing/consolidate_all_for_paper.py
nnunet/postprocessing/consolidate_postprocessing.py
nnunet/postprocessing/consolidate_postprocessing_simple.py
nnunet/preprocessing/__init__.py
nnunet/preprocessing/cropping.py
nnunet/preprocessing/preprocessing.py
nnunet/preprocessing/sanity_checks.py
nnunet/run/__init__.py
nnunet/run/default_configuration.py
nnunet/run/run_training.py
nnunet/run/run_training_DDP.py
nnunet/run/run_training_DP.py
nnunet/training/__init__.py
nnunet/training/model_restore.py
nnunet/training/cascade_stuff/__init__.py
nnunet/training/cascade_stuff/predict_next_stage.py
nnunet/training/data_augmentation/__init__.py
nnunet/training/data_augmentation/custom_transforms.py
nnunet/training/data_augmentation/default_data_augmentation.py
nnunet/training/data_augmentation/downsampling.py
nnunet/training/data_augmentation/pyramid_augmentations.py
nnunet/training/dataloading/__init__.py
nnunet/training/dataloading/dataset_loading.py
nnunet/training/learning_rate/__init__.py
nnunet/training/learning_rate/poly_lr.py
nnunet/training/loss_functions/ND_Crossentropy.py
nnunet/training/loss_functions/TopK_loss.py
nnunet/training/loss_functions/__init__.py
nnunet/training/loss_functions/deep_supervision.py
nnunet/training/loss_functions/dice_loss.py
nnunet/training/network_training/__init__.py
nnunet/training/network_training/network_trainer.py
nnunet/training/network_training/nnUNetTrainer.py
nnunet/training/network_training/nnUNetTrainerCascadeFullRes.py
nnunet/training/network_training/nnUNetTrainerV2.py
nnunet/training/network_training/nnUNetTrainerV2_CascadeFullRes.py
nnunet/training/network_training/nnUNetTrainerV2_DDP.py
nnunet/training/network_training/nnUNetTrainerV2_DP.py
nnunet/training/network_training/nnUNetTrainerV2_fp32.py
nnunet/training/network_training/nnUNet_variants/__init__.py
nnunet/training/network_training/nnUNet_variants/nnUNetTrainerCE.py
nnunet/training/network_training/nnUNet_variants/nnUNetTrainerNoDA.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/__init__.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_3ConvPerStage.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_3ConvPerStage_samefilters.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_BN.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_FRN.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_GN.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_GeLU.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_LReLU_slope_2en1.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_Mish.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_NoNormalization.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_NoNormalization_lr1en3.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_ReLU.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_ReLU_biasInSegOutput.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_ReLU_convReLUIN.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_ResencUNet.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_allConv3x3.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_lReLU_biasInSegOutput.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_lReLU_convlReLUIN.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_noDeepSupervision.py
nnunet/training/network_training/nnUNet_variants/architectural_variants/nnUNetTrainerV2_softDeepSupervision.py
nnunet/training/network_training/nnUNet_variants/cascade/__init__.py
nnunet/training/network_training/nnUNet_variants/cascade/nnUNetTrainerV2CascadeFullRes_DAVariants.py
nnunet/training/network_training/nnUNet_variants/cascade/nnUNetTrainerV2CascadeFullRes_lowerLR.py
nnunet/training/network_training/nnUNet_variants/cascade/nnUNetTrainerV2CascadeFullRes_shorter.py
nnunet/training/network_training/nnUNet_variants/cascade/nnUNetTrainerV2CascadeFullRes_shorter_lowerLR.py
nnunet/training/network_training/nnUNet_variants/copies/__init__.py
nnunet/training/network_training/nnUNet_variants/copies/nnUNetTrainerV2_copies.py
nnunet/training/network_training/nnUNet_variants/data_augmentation/__init__.py
nnunet/training/network_training/nnUNet_variants/data_augmentation/nnUNetTrainerV2_DA2.py
nnunet/training/network_training/nnUNet_variants/data_augmentation/nnUNetTrainerV2_independentScalePerAxis.py
nnunet/training/network_training/nnUNet_variants/data_augmentation/nnUNetTrainerV2_insaneDA.py
nnunet/training/network_training/nnUNet_variants/data_augmentation/nnUNetTrainerV2_noDA.py
nnunet/training/network_training/nnUNet_variants/data_augmentation/nnUNetTrainerV2_noMirroring.py
nnunet/training/network_training/nnUNet_variants/loss_function/__init__.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_ForceBD.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_ForceSD.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_CE.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_CEGDL.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_Dice.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_DiceTopK10.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_Dice_lr1en3.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_Dice_squared.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_MCC.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_Loss_TopK10.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_focalLoss.py
nnunet/training/network_training/nnUNet_variants/loss_function/nnUNetTrainerV2_graduallyTransitionFromCEToDice.py
nnunet/training/network_training/nnUNet_variants/miscellaneous/__init__.py
nnunet/training/network_training/nnUNet_variants/miscellaneous/nnUNetTrainerV2_fullEvals.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/__init__.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_Adam.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_Adam_ReduceOnPlateau.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_Adam_lr_3en4.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_O2.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_Ranger_lr1en2.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_Ranger_lr3en3.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_Ranger_lr3en4.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_SGD_ReduceOnPlateau.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_SGD_fixedSchedule.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_SGD_fixedSchedule2.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_SGD_lrs.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_cycleAtEnd.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_fp16.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_momentum09.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_momentum095.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_momentum098.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_momentum09in2D.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_reduceMomentumDuringTraining.py
nnunet/training/network_training/nnUNet_variants/optimizer_and_lr/nnUNetTrainerV2_warmup.py
nnunet/training/network_training/nnUNet_variants/profiling/__init__.py
nnunet/training/network_training/nnUNet_variants/profiling/nnUNetTrainerV2_2epochs.py
nnunet/training/network_training/nnUNet_variants/profiling/nnUNetTrainerV2_dummyLoad.py
nnunet/training/network_training/nnUNet_variants/resampling/__init__.py
nnunet/training/network_training/nnUNet_variants/resampling/nnUNetTrainerV2_resample33.py
nnunet/training/optimizer/__init__.py
nnunet/training/optimizer/ranger.py
nnunet/utilities/__init__.py
nnunet/utilities/distributed.py
nnunet/utilities/file_conversions.py
nnunet/utilities/file_endings.py
nnunet/utilities/folder_names.py
nnunet/utilities/nd_softmax.py
nnunet/utilities/one_hot_encoding.py
nnunet/utilities/recursive_delete_npz.py
nnunet/utilities/recursive_rename_taskXX_to_taskXXX.py
nnunet/utilities/sitk_stuff.py
nnunet/utilities/task_name_id_conversion.py
nnunet/utilities/tensor_utilities.py
nnunet/utilities/to_torch.py