Metadata-Version: 2.1
Name: pmtutils
Version: 0.0.1
Summary: Portable toolkit for interacting with the PyMetaTome pipeline
Home-page: https://github.com/lambertsbennett/pmtutils
Author: Bennett Lambert
Author-email: lambertb@uw.edu
License: UNKNOWN
Download-URL: https://github.com/lambertsbennett/pmtutils/archive/v_01.tar.gz
Description: ## pmtutils
        PyMetaTome utilities. When working with the 
        [PyMetaTome pipeline](https://github.com/armbrustlab/PyMetaTome),
        there is a need for portable helper tools that can easily be added to custom 
        containers. 
        
        These utilities are currently targeted at key processes in PyMetaTome:
        
        - Database creation and similarity matrix construction.
        - YAML metadata file operations.
        - Read sampling prior to bioinformatic analyses.
        - Webhook handling.
        
        pmtutils requires [Samtools](http://www.htslib.org/download/) and [ClustalW2](http://www.clustal.org/clustal2/) for database creation.
        
        Python dependencies:
        - [Biopython](https://biopython.org/)
        - [ruamel_yaml](https://yaml.readthedocs.io/en/latest/overview.html)
        - NumPy
        - [flask](https://flask.palletsprojects.com/en/1.1.x/)
        
Keywords: Transcriptomics,Bioinformatics
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: Unix
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Development Status :: 2 - Pre-Alpha
Requires-Python: >=3.6
Description-Content-Type: text/markdown
