Metadata-Version: 2.1
Name: twinstop
Version: 0.1.14
Summary: twinstop identifies selenoproteins in close related transcriptomes
Home-page: https://github.com/marco-mariotti/twinstop
Author: Marco Mariotti and Sergio Sanchez Moragues
Author-email: marco.mariotti@ub.edu
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.12
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: biopython>=1.78
Requires-Dist: easybioinfo>=0.3.1
Requires-Dist: easyterm>=1.0.0
Requires-Dist: file-chunk-iterators>=0.0.1
Requires-Dist: pyranges1>=1.0.0
Requires-Dist: pandas>=2.0.0
Requires-Dist: pyfaidx>=0.7.2
Requires-Dist: multiprocess>=0.70.14
Requires-Dist: numpy>=2.0.0
Requires-Dist: scikit-learn>=1.3.0

# twinstop
Twinstop identifies selenoproteins in close related transcriptomes

# Installation
In a new conda environment, run::

   conda install -c conda-forge -c bioconda -c mmariotti    twinstop

## Installation troubleshooting
If solving takes forever, we recommend switching to mamba instead.
That is, uninstall conda; install mamba; create a new environment; then run the command::

   mamba install -c conda-forge -c bioconda -c mmariotti    twinstop


As of this writing, the command above correctly installs twinstop in a linux64 system.
In case it fails of any unresolved conflicts, try to download the file requirements.txt,
and run this to create a copy of a verified conda environment::

  conda create --name twinstop --file requirements.txt

Then activate the new env twinstop, then run the install command above.

# Usage
To see usage, run::

  twinstop -h


# Authors
Sergio Sanchez Moragues and Marco Mariotti
