Metadata-Version: 2.1
Name: pyBCS-bioturing
Version: 0.4.2
Summary: Create BioTuring Compressed Study (bcs) file
Home-page: https://www.bioturing.com
Author: BioTuring
Author-email: support@bioturing.com
License: UNKNOWN
Description: # pyBCS
        
        This is a python library to create a BioTuring Compressed Study (`bcs`) file from an AnnData (scanpy) object.
        
        `bcs` files can be imported directly into [BBrowser](https://bioturing.com/bbrowser), a software for single-cell data.
        
        Visit our [github](https://github.com/bioturing/pyBCS) for more detail.
        
        ## Installation
        
        pip install pyBCS-bioturing
        
        ## Example
        
        ### Scanpy
        
        ```python
        from pyBCS import scanpy2bcs
        scanpy2bcs.format_data("/mnt/example/data.h5ad", "/mnt/example/data.bcs",
                                input_format="h5ad", graph_based="louvain")
        ```
        
        
        ### SPRING
        
        ```python
        from pyBCS import scanpy2bcs
        scanpy2bcs.format_data("/mnt/example/spring_study", "/mnt/example/data.bcs",
                                input_format="spring",
                                graph_based="louvain")
        ```
        
        ### Loom
        
        ```python
        from pyBCS import scanpy2bcs
        scanpy2bcs.format_data("/mnt/example/data.loom", "/mnt/example/data.bcs",
                                input_format="loom",
                                barcode_name="CellID",
                                feature_name="Gene",
                                dimred_keys={"tsne":["tsne1", "tsne2"]})
        ```
        
        ### Abloom
        
        ```python
        from pyBCS import scanpy2bcs
        scanpy2bcs.format_data("/mnt/example/data.loom", "/mnt/example/data.bcs",
                                input_format="abloom",
                                barcode_name="observation_id",
                                feature_name="accession_id",
                                graph_based="cluster")
        ```
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
