Metadata-Version: 2.1
Name: cylinter
Version: 0.0.37
Summary: CyLinter
Home-page: https://github.com/labsyspharm/cylinter
Author: Gregory J. Baker
Author-email: gregory_baker2@hms.harvard.edu
License: MIT License
Download-URL: https://github.com/labsyspharm/cylinter/archive/v0.0.37.tar.gz
Keywords: scripts single cell data science
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: End Users/Desktop
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Visualization
Requires-Python: >=3.6.0
License-File: LICENSE

<!-- ![alt text](https://github.com/labsyspharm/cylinter/blob/master/docs/assets/images/cylinter-logo.svg?raw=true) -->
![](docs/assets/images/cylinter-logo.svg)

## An Interactive Image Segmentation Filter for Multiplex Microscopy.

CyLinter is quality control software for identifying and removing cell segmentation instances corrupted by optical and/or image-processing artifacts in multiplex microscopy images. The tool is user-guided and comprises a set of modular and extensible QC modules instantiated in a configurable [Python](https://www.python.org) Class object. Module results are cached to allow for dynamic restarts.

CyLinter development is led by [Greg Baker](https://github.com/gjbaker) at the [Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/), Harvard Medical School.

**Funding:** This work is supported by the following:

* *NCI grant U2C-CA233262: Pre-cancer Atlases of Cutaneous and Hematologic Origin*
* *NIH grant U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs*
* *Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation*

**Instructions:** https://labsyspharm.github.io/cylinter/


