.gitattributes
.gitignore
.readthedocs.yml
DESCRIPTION.md
LICENSE
MANIFEST.in
README.md
requirements_dev.txt
setup.cfg
setup.py
bin/blastn
bin/igblastn
bin/makeblastdb
bin/tigger-genotype.R
dandelion/__init__.py
dandelion/version.py
dandelion/plotting/__init__.py
dandelion/plotting/_plotting.py
dandelion/preprocessing/__init__.py
dandelion/preprocessing/_preprocessing.py
dandelion/preprocessing/external/__init__.py
dandelion/preprocessing/external/_preprocessing.py
dandelion/tools/__init__.py
dandelion/tools/_diversity.py
dandelion/tools/_network.py
dandelion/tools/_tools.py
dandelion/utilities/__init__.py
dandelion/utilities/_utilities.py
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database/germlines/imgt/human/constant/imgt_human_TRAC.fasta
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database/germlines/imgt/human/vdj/imgt_human_TRBV.fasta
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database/germlines/imgt/human/vdj_aa/imgt_aa_human_IGHV.fasta
database/germlines/imgt/human/vdj_aa/imgt_aa_human_IGKV.fasta
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database/germlines/imgt/human/vdj_aa/imgt_aa_human_TRAV.fasta
database/germlines/imgt/human/vdj_aa/imgt_aa_human_TRBV.fasta
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database/germlines/imgt/human/vdj_aa/imgt_aa_human_TRGV.fasta
database/germlines/imgt/mouse/constant/imgt_mouse_IGHC.fasta
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docs/_static/dandelion.preprocessing.reassign_alleles.rst
docs/_static/dandelion.tools.clone_centrality.rst
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docs/_static/dandelion.tools.find_clones.rst
docs/_static/dandelion.tools.generate_network.rst
docs/_static/dandelion.tools.transfer.rst
docs/_static/dandelion.utilities.Dandelion.rst
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docs/notebooks/1_dandelion_preprocessing-10x data.ipynb
docs/notebooks/2_dandelion_filtering-10x data.ipynb
docs/notebooks/3_dandelion_findingclones_and_analysis-10x data.ipynb
docs/notebooks/5_dandelion_running_from_R.ipynb
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notebooks/1_dandelion_preprocessing-10x data.ipynb
notebooks/2_dandelion_filtering-10x data.ipynb
notebooks/3_dandelion_findingclones_and_analysis-10x data.ipynb
notebooks/5_dandelion_running_from_R.ipynb
notebooks/img/dandelion_class.png
notebooks/img/dandelion_logo.png
notebooks/img/dandelion_logo_illustration.png
notebooks/img/dandelion_overview.png
sc_dandelion.egg-info/PKG-INFO
sc_dandelion.egg-info/SOURCES.txt
sc_dandelion.egg-info/dependency_links.txt
sc_dandelion.egg-info/not-zip-safe
sc_dandelion.egg-info/requires.txt
sc_dandelion.egg-info/top_level.txt