torch>=1.9.0
transformers>=4.26.0
numpy>=1.21.0
opencv-python-headless>=4.5.0
scikit-image>=0.19.0
scipy>=1.7.0
pandas>=1.3.0
tqdm>=4.60.0
Pillow>=8.0.0
safetensors>=0.3.0
openpyxl>=3.0.0

[all]
samcell[dev,evaluation,excel,gui,napari,training]

[dev]
pytest>=6.0
pytest-cov>=2.0
black>=21.0
flake8>=3.8
mypy>=0.800
jupyter>=1.0.0

[evaluation]
stardist>=0.8.0
matplotlib>=3.3.0
seaborn>=0.11.0

[excel]
openpyxl>=3.0.0

[gui]
PyQt6>=6.0

[napari]
napari>=0.4.14
magicgui>=0.5.0

[training]
h5py>=3.0.0
torchvision>=0.10.0
wandb>=0.12.0
psutil>=5.8.0
matplotlib>=3.3.0
