MANIFEST.in
README.md
cLoops2.log
cLoops2_env.yaml
cLoops2_pip_readme.md
setup.py
cLoops2/__init__.py
cLoops2/agg.py
cLoops2/ano.py
cLoops2/blockDBSCAN.py
cLoops2/cDBSCAN2.py
cLoops2/cLoops2.py
cLoops2/callCisLoops.py
cLoops2/callDiffLoops.py
cLoops2/callDomains.py
cLoops2/callPeaks.py
cLoops2/callTransLoops.py
cLoops2/cmat.py
cLoops2/comp.py
cLoops2/ds.py
cLoops2/dump.py
cLoops2/est.py
cLoops2/estDis.py
cLoops2/estSim.py
cLoops2/filter.py
cLoops2/findTargets.py
cLoops2/geo.py
cLoops2/io.py
cLoops2/montage.py
cLoops2/norm.py
cLoops2/plot.py
cLoops2/qc.py
cLoops2/quant.py
cLoops2/settings.py
cLoops2/stat.py
cLoops2/utils.py
cLoops2.egg-info/PKG-INFO
cLoops2.egg-info/SOURCES.txt
cLoops2.egg-info/dependency_links.txt
cLoops2.egg-info/entry_points.txt
cLoops2.egg-info/requires.txt
cLoops2.egg-info/top_level.txt
cLoops2/__pycache__/__init__.cpython-35.pyc
cLoops2/__pycache__/__init__.cpython-36.pyc
cLoops2/__pycache__/__init__.cpython-37.pyc
cLoops2/__pycache__/__init__.cpython-38.pyc
cLoops2/__pycache__/__init__.cpython-39.pyc
cLoops2/__pycache__/agg.cpython-36.pyc
cLoops2/__pycache__/agg.cpython-37.pyc
cLoops2/__pycache__/agg.cpython-38.pyc
cLoops2/__pycache__/analyzeLoops.cpython-36.pyc
cLoops2/__pycache__/analyzeLoops.cpython-37.pyc
cLoops2/__pycache__/ano.cpython-36.pyc
cLoops2/__pycache__/ano.cpython-37.pyc
cLoops2/__pycache__/ano.cpython-38.pyc
cLoops2/__pycache__/blockDBSCAN.cpython-36.pyc
cLoops2/__pycache__/blockDBSCAN.cpython-37.pyc
cLoops2/__pycache__/blockDBSCAN.cpython-38.pyc
cLoops2/__pycache__/cDBSCAN2.cpython-36.pyc
cLoops2/__pycache__/cLoops2.cpython-35.pyc
cLoops2/__pycache__/cLoops2.cpython-36.pyc
cLoops2/__pycache__/cLoops2.cpython-37.pyc
cLoops2/__pycache__/cLoops2.cpython-38.pyc
cLoops2/__pycache__/cLoops2.cpython-39.pyc
cLoops2/__pycache__/callCisLoops.cpython-36.pyc
cLoops2/__pycache__/callCisLoops.cpython-37.pyc
cLoops2/__pycache__/callCisLoops.cpython-38.pyc
cLoops2/__pycache__/callDiffLoops.cpython-36.pyc
cLoops2/__pycache__/callDiffLoops.cpython-37.pyc
cLoops2/__pycache__/callDiffLoops.cpython-38.pyc
cLoops2/__pycache__/callDomains.cpython-36.pyc
cLoops2/__pycache__/callDomains.cpython-37.pyc
cLoops2/__pycache__/callDomains.cpython-38.pyc
cLoops2/__pycache__/callPeaks.cpython-36.pyc
cLoops2/__pycache__/callPeaks.cpython-37.pyc
cLoops2/__pycache__/callPeaks.cpython-38.pyc
cLoops2/__pycache__/callTransLoops.cpython-36.pyc
cLoops2/__pycache__/callTransLoops.cpython-37.pyc
cLoops2/__pycache__/callTransLoops.cpython-38.pyc
cLoops2/__pycache__/cmat.cpython-36.pyc
cLoops2/__pycache__/cmat.cpython-37.pyc
cLoops2/__pycache__/cmat.cpython-38.pyc
cLoops2/__pycache__/ds.cpython-36.pyc
cLoops2/__pycache__/ds.cpython-37.pyc
cLoops2/__pycache__/ds.cpython-38.pyc
cLoops2/__pycache__/ds.cpython-39.pyc
cLoops2/__pycache__/dump.cpython-36.pyc
cLoops2/__pycache__/dump.cpython-37.pyc
cLoops2/__pycache__/dump.cpython-38.pyc
cLoops2/__pycache__/est.cpython-36.pyc
cLoops2/__pycache__/est.cpython-37.pyc
cLoops2/__pycache__/est.cpython-38.pyc
cLoops2/__pycache__/est.cpython-39.pyc
cLoops2/__pycache__/estDis.cpython-36.pyc
cLoops2/__pycache__/estDis.cpython-37.pyc
cLoops2/__pycache__/estDis.cpython-38.pyc
cLoops2/__pycache__/estSim.cpython-36.pyc
cLoops2/__pycache__/estSim.cpython-37.pyc
cLoops2/__pycache__/estSim.cpython-38.pyc
cLoops2/__pycache__/filter.cpython-36.pyc
cLoops2/__pycache__/filter.cpython-37.pyc
cLoops2/__pycache__/filter.cpython-38.pyc
cLoops2/__pycache__/findTargets.cpython-36.pyc
cLoops2/__pycache__/findTargets.cpython-37.pyc
cLoops2/__pycache__/findTargets.cpython-38.pyc
cLoops2/__pycache__/geo.cpython-36.pyc
cLoops2/__pycache__/geo.cpython-37.pyc
cLoops2/__pycache__/geo.cpython-38.pyc
cLoops2/__pycache__/io.cpython-36.pyc
cLoops2/__pycache__/io.cpython-37.pyc
cLoops2/__pycache__/io.cpython-38.pyc
cLoops2/__pycache__/io.cpython-39.pyc
cLoops2/__pycache__/montage.cpython-36.pyc
cLoops2/__pycache__/montage.cpython-37.pyc
cLoops2/__pycache__/montage.cpython-38.pyc
cLoops2/__pycache__/plot.cpython-36.pyc
cLoops2/__pycache__/plot.cpython-37.pyc
cLoops2/__pycache__/plot.cpython-38.pyc
cLoops2/__pycache__/plot.cpython-39.pyc
cLoops2/__pycache__/qc.cpython-36.pyc
cLoops2/__pycache__/qc.cpython-37.pyc
cLoops2/__pycache__/qc.cpython-38.pyc
cLoops2/__pycache__/qc.cpython-39.pyc
cLoops2/__pycache__/quant.cpython-36.pyc
cLoops2/__pycache__/quant.cpython-37.pyc
cLoops2/__pycache__/quant.cpython-38.pyc
cLoops2/__pycache__/settings.cpython-36.pyc
cLoops2/__pycache__/settings.cpython-37.pyc
cLoops2/__pycache__/settings.cpython-38.pyc
cLoops2/__pycache__/utils.cpython-36.pyc
cLoops2/__pycache__/utils.cpython-37.pyc
cLoops2/__pycache__/utils.cpython-38.pyc
cLoops2/__pycache__/utils.cpython-39.pyc
data/hg19.chrom.sizes
data/hg38.chrom.sizes
scripts/getBedpeFBed.py
scripts/getDI.py
scripts/getFRiF.py
scripts/getIS.py
scripts/getIntDensity.py
scripts/getLocalIDS.py
scripts/getPETsAno.py
scripts/getSigDist.py
scripts/getSigEnrich.py
scripts/hicpro2bedpe.py
scripts/juicerLong2bedpe.py
scripts/mergeDomains.py
scripts/plotDiffHeatmap.py
scripts/tow.py
scripts/tracPre.py
scripts/tracPre2.py