Metadata-Version: 2.1
Name: sitk-cli
Version: 0.2.1
Summary: Wrap SimpleITK functions as command lines
Home-page: https://github.com/dyollb/sitk-cli
License: MIT License
Project-URL: Bug Tracker, https://github.com/dyollb/sitk-cli/issues
Project-URL: Source Code, https://github.com/dyollb/sitk-cli
Description-Content-Type: text/markdown
Provides-Extra: dev
License-File: LICENSE

# Wrap SimpleITK functions as command lines

[![Build Actions Status](https://github.com/dyollb/segmantic/workflows/CI/badge.svg)](https://github.com/dyollb/sitk-cli/actions)
[![License](https://img.shields.io/badge/license-MIT-green.svg)](https://https://opensource.org/licenses/MIT)
[![PyPI version](https://badge.fury.io/py/sitk-cli.svg)](https://badge.fury.io/py/sitk-cli)

Create simple command line interface from functions that use SimpleITK images as arguments or return type.

Install from PyPI:

```sh
pip install sitk-cli
```

Example:

```Python
import SimpleITK as sitk
import typer

from sitk-cli import make_cli


def fill_holes_slice_by_slice(mask: sitk.Image) -> sitk.Image:
    mask = mask != 0
    output = sitk.Image(mask.GetSize(), mask.GetPixelID())
    output.CopyInformation(mask)
    for k in range(mask.GetSize()[2]):
        output[:, :, k] = sitk.BinaryFillhole(mask[:, :, k], fullyConnected=False)
    return output


if __name__ == "__main__":
    typer.run(make_cli(fill_holes_slice_by_slice))
```


![](./docs/demo.gif)
