Metadata-Version: 2.1
Name: funannotate
Version: 1.8.3
Summary: funannotate: eukaryotic genome annotation pipeline
Home-page: https://github.com/nextgenusfs/funannotate
Author: Jon Palmer
Author-email: nextgenusfs@gmail.com
License: BSD-2
Description: 
        [![Latest Github release](https://img.shields.io/github/release/nextgenusfs/funannotate.svg)](https://github.com/nextgenusfs/funannotate/releases/latest)
        [![DOI](https://zenodo.org/badge/48254740.svg)](https://zenodo.org/badge/latestdoi/48254740)
        ![Conda](https://img.shields.io/conda/dn/bioconda/funannotate)
        
        ![Alt text](funannotate-logo.png?raw=true "Funannotate")
        
        funannotate is a pipeline for genome annotation (built specifically for fungi, but will also work with higher eukaryotes). Installation, usage, and more information can be found at [http://funannotate.readthedocs.io](http://funannotate.readthedocs.io)
        
        #### Quickstart:
        
        The pipeline can be installed with conda (via [bioconda](https://bioconda.github.io/)):
        ```
        #add appropriate channels
        conda config --add channels defaults
        conda config --add channels bioconda
        conda config --add channels conda-forge
        
        #then create environment
        conda create -n funannotate funannotate
        ```
        If you want to use GeneMark-ES/ET you will need to install that manually following developers instructions:
        http://topaz.gatech.edu/GeneMark/license_download.cgi
        
        Note that you will need to change the shebang line for all perl scripts in GeneMark to use `/usr/bin/env perl`.
        You will then also need to add `gmes_petap.pl` to the $PATH or set the environmental variable $GENEMARK_PATH to the gmes_petap directory.
        
        To install just the python funannotate package, you can do this with pip:
        ```
        python -m pip install funannotate
        ```
        
        To install the most updated code in master you can run:
        ```
        python -m pip install git+https://github.com/nextgenusfs/funannotate.git
        ```
        
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2
Classifier: Operating System :: Unix
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4
Description-Content-Type: text/markdown
