README.md
setup.py
ngslite/__init__.py
ngslite/count.py
ngslite/dataclass.py
ngslite/dataframe.py
ngslite/dna.py
ngslite/fasta.py
ngslite/fasta_gff.py
ngslite/fastq.py
ngslite/filetools.py
ngslite/genbank_parse.py
ngslite/genbank_write.py
ngslite/gff.py
ngslite/lowlevel.py
ngslite/random.py
ngslite/sam.py
ngslite/vcf.py
ngslite/wobble_codon.py
ngslite.egg-info/PKG-INFO
ngslite.egg-info/SOURCES.txt
ngslite.egg-info/dependency_links.txt
ngslite.egg-info/not-zip-safe
ngslite.egg-info/requires.txt
ngslite.egg-info/top_level.txt
ngslite/cmd_wrapper/__init__.py
ngslite/cmd_wrapper/bcftools.py
ngslite/cmd_wrapper/bedtools.py
ngslite/cmd_wrapper/bowtie2.py
ngslite/cmd_wrapper/bwa.py
ngslite/cmd_wrapper/clustalw.py
ngslite/cmd_wrapper/glimmer.py
ngslite/cmd_wrapper/hmmer.py
ngslite/cmd_wrapper/metaspades.py
ngslite/cmd_wrapper/muscle.py
ngslite/cmd_wrapper/orf_finder.py
ngslite/cmd_wrapper/prokka.py
ngslite/cmd_wrapper/samtools.py
ngslite/cmd_wrapper/seqtk.py
ngslite/cmd_wrapper/trim_galore.py
ngslite/legacy/__init__.py
ngslite/legacy/arrfunc.py
ngslite/legacy/fasta_gtf.py
ngslite/legacy/gtf.py
test/__init__.py
test/setup.py
test/test_count.py
test/test_dataclass.py
test/test_dataframe.py
test/test_dna.py
test/test_fasta.py
test/test_fasta_gff.py
test/test_fastq.py
test/test_filetools.py
test/test_genbank_parse.py
test/test_genbank_write.py
test/test_gff.py
test/test_random.py
test/test_sam.py
test/test_vcf.py
test/test_wobble_codon.py
test/cmd_wrapper/__init__.py
test/cmd_wrapper/test_bcftools.py
test/cmd_wrapper/test_hmmer.py
test/cmd_wrapper/test_samtools.py
test/cmd_wrapper/test_seqtk.py
test/cmd_wrapper/test_trim_galore.py
test/legacy/__init__.py
test/legacy/test_arrfunc.py