LICENSE.md
MANIFEST.in
README.md
TODO.md
pyproject.toml
setup.py
jcast/__init__.py
jcast/__main__.py
jcast/annots.py
jcast/helpers.py
jcast/junctions.py
jcast/main.py
jcast/params.py
jcast/sequences.py
jcast.egg-info/PKG-INFO
jcast.egg-info/SOURCES.txt
jcast.egg-info/dependency_links.txt
jcast.egg-info/entry_points.txt
jcast.egg-info/requires.txt
jcast.egg-info/top_level.txt
tests/__init__.py
tests/test_gtf.py
tests/test_pkm.py
tests/test_translate.py
tests/data/genome/.DS_Store
tests/data/genome/Homo_sapiens.GRCh38.89.chromosome.15.gtf
tests/data/genome/Homo_sapiens.GRCh38.dna.chromosome.15.fa.gz
tests/data/genome/Rattus_norvegicus.Rnor_6.0.100.chromosome.12.gtf
tests/data/rmats/A3SS.MATS.JC.txt
tests/data/rmats/A5SS.MATS.JC.txt
tests/data/rmats/MXE.MATS.JC.txt
tests/data/rmats/RI.MATS.JC.txt
tests/data/rmats/SE.MATS.JC.txt