README.rst
setup.py
amplimap/Snakefile
amplimap/__init__.py
amplimap/common.py
amplimap/config_default.yaml
amplimap/consensus.py
amplimap/coverage.py
amplimap/merge_folders.py
amplimap/naive_mapper.py
amplimap/parse_reads.py
amplimap/parse_reads_cy.c
amplimap/parse_reads_cy.pyx
amplimap/pileup.py
amplimap/reader.py
amplimap/run.py
amplimap/run_setup.py
amplimap/simulate.py
amplimap/stats_alignment.py
amplimap/variants.py
amplimap/version.py
amplimap.egg-info/PKG-INFO
amplimap.egg-info/SOURCES.txt
amplimap.egg-info/dependency_links.txt
amplimap.egg-info/entry_points.txt
amplimap.egg-info/requires.txt
amplimap.egg-info/top_level.txt
tests/__init__.py
tests/naive_mapper_test.py
tests/parse_reads_test.py
tests/pileup_test.py
tests/reader_test.py
tests/run_test.py