LICENSE
MANIFEST.in
README.md
droptables.py
master-test.sh
requirements.txt
setup.py
time-wildcards.sh
update_load.sh
update_query.sh
geminicassandra/GeminiQuery.py
geminicassandra/__init__.py
geminicassandra/anno_info.py
geminicassandra/annotations.py
geminicassandra/compression.py
geminicassandra/config.py
geminicassandra/database_cassandra.py
geminicassandra/dgidb.py
geminicassandra/func_impact.py
geminicassandra/gemini_amend.py
geminicassandra/gemini_annotate.py
geminicassandra/gemini_browser.py
geminicassandra/gemini_constants.py
geminicassandra/gemini_dbinfo.py
geminicassandra/gemini_load.py
geminicassandra/gemini_load_chunk.py
geminicassandra/gemini_main.py
geminicassandra/gemini_plot.py
geminicassandra/gemini_query.py
geminicassandra/gemini_region.py
geminicassandra/gemini_stats.py
geminicassandra/gemini_subjects.py
geminicassandra/gemini_update.py
geminicassandra/gemini_utils.py
geminicassandra/gene_table.py
geminicassandra/infotag.py
geminicassandra/install-data.py
geminicassandra/ped.py
geminicassandra/popgen.py
geminicassandra/query_expressions.py
geminicassandra/severe_impact.py
geminicassandra/snpEff.py
geminicassandra/sql.py
geminicassandra/sql_extended.py
geminicassandra/sql_utils.py
geminicassandra/stats.py
geminicassandra/structural_variants.py
geminicassandra/table_schemes.py
geminicassandra/vep.py
geminicassandra/version.py
geminicassandra.egg-info/PKG-INFO
geminicassandra.egg-info/SOURCES.txt
geminicassandra.egg-info/dependency_links.txt
geminicassandra.egg-info/not-zip-safe
geminicassandra.egg-info/requires.txt
geminicassandra.egg-info/top_level.txt
geminicassandra/data/__init__.py
geminicassandra/scripts/__init__.py
geminicassandra/scripts/gemini_install.py
geminicassandra/scripts/geminicassandra
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.snpEff.vcf
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.vcf
test/cassandra-test-query.sh
test/cassandra-test-setup.sh
test/data-setup.sh
test/test-clinvar.sh
test/test-columns.sh
test/test-exac.sh
test/test-genome.sh
test/test-genotypes.sh
test/test-load.sh
test/test-query-multicore.sh
test/test-query.sh
test/test-wildcards-multicore.sh
test/test-wildcards.sh
test/test.auto_dom.no_parents.2.ped
test/test.auto_dom.no_parents.2.vcf
test/test.auto_dom.no_parents.3.ped
test/test.auto_dom.no_parents.3.vcf
test/test.auto_dom.no_parents.4.ped
test/test.auto_dom.no_parents.4.vcf
test/test.auto_dom.no_parents.5.ped
test/test.auto_dom.no_parents.5.vcf
test/test.auto_dom.no_parents.ped
test/test.auto_dom.no_parents.vcf
test/test.auto_dom.ped
test/test.auto_dom.vcf
test/test.auto_rec.no_parents.2.ped
test/test.auto_rec.no_parents.2.vcf
test/test.auto_rec.no_parents.3.ped
test/test.auto_rec.no_parents.3.vcf
test/test.auto_rec.no_parents.4.ped
test/test.auto_rec.no_parents.4.vcf
test/test.auto_rec.no_parents.5.ped
test/test.auto_rec.no_parents.5.vcf
test/test.auto_rec.no_parents.ped
test/test.auto_rec.no_parents.vcf
test/test.auto_rec.ped
test/test.auto_rec.vcf
test/test.burden.ped
test/test.burden.vcf
test/test.cadd.vcf
test/test.clinvar.vcf
test/test.comp_het.2.vcf
test/test.comp_het.3.vcf
test/test.comp_het.ped
test/test.comp_het.vcf
test/test.cosmic.vcf
test/test.de_novo.affected.and.unaffected.ped
test/test.de_novo.affected.and.unaffected.vcf
test/test.de_novo.ped
test/test.de_novo.vcf
test/test.exac.vcf
test/test.exac.vcf.gz
test/test.exac.vcf.gz.gbi
test/test.family.vcf
test/test.fusions.ped
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test/test.passonly.vcf
test/test.query.vcf
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test/test.query.vcf.gz.gbi
test/test.region.vep.vcf
test/test.roh.vcf
test/test.snpeff.vcf
test/test.snpeff.vcf.gz
test/test.snpeff.vcf.gz.gbi
test/test.somatic.ped
test/test.somatic.vcf
test/test.vcf_id.snpeff.vcf
test/test.vcf_id.snpeff.vcf.gz
test/test.vcf_id.snpeff.vcf.gz.gbi
test/test1.snpeff.vcf
test/test2.snpeff.vcf
test/test2.snpeff.vcf.gz
test/test2.snpeff.vcf.gz.gbi
test/test3.snpeff.vcf
test/test3.snpeff.vcf.gz
test/test3.snpeff.vcf.gz.gbi
test/test4.snpeff.ped
test/test4.vep.snpeff.vcf
test/test4.vep.snpeff.vcf.gz
test/test4.vep.snpeff.vcf.gz.gbi
test/test5.vep.snpeff.vcf
test/test_amend_sample.ped
test/test_extended_ped.ped
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test/loading_logs/9479.csv
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test/loading_logs/9482.csv
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test/loading_logs/9485.csv
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test/loading_logs/9562.csv
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test/loading_logs/9565.csv
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test/loading_logs/9568.csv
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test/loading_logs/9632.csv
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test/loading_logs/9635.csv
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test/loading_logs/9638.csv
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test/loading_logs/9702.csv
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test/loading_logs/9705.csv
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test/loading_logs/9708.csv
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test/loading_logs/9773.csv
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test/loading_logs/9776.csv
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test/loading_logs/9779.csv
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test/loading_logs/9843.csv
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test/loading_logs/9846.csv
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test/loading_logs/9849.csv
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test/loading_logs/9913.csv
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test/loading_logs/9916.csv
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test/loading_logs/9919.csv
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test/loading_logs/9965.csv
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test/loading_logs/9984.csv
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