Metadata-Version: 2.1
Name: genotype
Version: 2.5.1
Summary: genotype provides an automated pipipeline for comparinggenotypes from different assays.
Home-page: https://github.com/Clinical-Genomics/genotype
Author: Robin Andeer
Author-email: mans.magnusson@scilifelab.se
License: MIT
Description: 
        <p align="center">
          <a href="https://github.com/Clinical-Genomics/genotype">
            <img width="240px" height="180px" src="artwork/icon.png"/>
          </a>
        </p>
        
        
        # Genotype 
        ![Build Status - Github][gh-actions-badge]
        [![Coverage Status][coveralls-image]][coveralls-url]
        [![GitHub issues-closed][closed-issues-img]][closed-issues-url]
        [![Average time to resolve an issue][ismaintained-resolve-img]][ismaintained-resolve-url]
        [![Percentage of issues still open][ismaintained-open-rate-img]][ismaintained-open-rate-url]
        [![CodeFactor][codefactor-badge]][codefactor-url]
        [![Code style: black][black-image]][black-url]
        Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.
        
        ## Install
        
        ```bash
        $ conda install -c bioconda pysam pyyaml sqlalchemy flask
        $ pip install genotype
        ```
        
        ## Help?
        
        Please check out the documentation
        
        
        [readthedocs-url]: https://readthedocs.org/projects/genotype/?badge=latest
        [readthedocs-img]: https://readthedocs.org/projects/genotype/badge/?version=latest
        
        [gh-actions-badge]: https://github.com/Clinical-Genomics/genotype/workflows/Tests%20and%20Coverage/badge.svg
        [closed-issues-img]: https://img.shields.io/github/issues-closed/Clinical-Genomics/genotype.svg
        [closed-issues-url]: https://GitHub.com/Clinical-Genomics/genotype/issues?q=is%3Aissue+is%3Aclosed
        [ismaintained-resolve-img]: http://isitmaintained.com/badge/resolution/Clinical-Genomics/genotype.svg
        [ismaintained-resolve-url]: http://isitmaintained.com/project/Clinical-Genomics/genotype
        [ismaintained-open-rate-img]: http://isitmaintained.com/badge/open/Clinical-Genomics/genotype.svg
        [ismaintained-open-rate-url]: http://isitmaintained.com/project/Clinical-Genomics/genotype
        [codefactor-badge]: https://www.codefactor.io/repository/github/clinical-genomics/genotype/badge
        [codefactor-url]: https://www.codefactor.io/repository/github/clinical-genomics/genotype
        [black-image]: https://img.shields.io/badge/code%20style-black-000000.svg
        [black-url]: https://github.com/psf/black
        
        [coveralls-url]: https://coveralls.io/github/Clinical-Genomics/genotype
        [coveralls-image]: https://coveralls.io/repos/github/Clinical-Genomics/genotype/badge.svg?branch=master
        
Keywords: genotype development
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Classifier: Environment :: Console
Description-Content-Type: text/markdown
