pysb<=1.9.1,>=1.3.0
objectpath
rdflib==4.2.2
requests>=2.11
lxml
ipython
future
networkx>=2
pandas
ndex2==2.0.1
jinja2
protmapper>=0.0.19
obonet
sympy==1.3
tqdm
pybiopax>=0.0.5

[all]
stemming
flask
python-libsbml
matplotlib
pygraphviz
docstring-parser
pytz
nltk
pykqml
pybel<0.16.0,>=0.15.0
flask_cors
reportlab
pyyaml>=5.1.0
gilda
unidecode
kappy==4.0.0rc1
tweepy
paths-graph
cython
click
boto3
tzlocal
flask_restx
pyjnius==1.1.4
adeft
openpyxl

[api]
flask
flask_restx
flask_cors
docstring-parser

[aws]
boto3
reportlab

[bel]
pybel<0.16.0,>=0.15.0

[eidos_offline]
pyyaml>=5.1.0
cython
pyjnius==1.1.4

[explanation]
kappy==4.0.0rc1
paths-graph

[geneways]
stemming
nltk

[graph]
pygraphviz

[grounding]
adeft
gilda

[hypothesis]
gilda

[isi]
nltk
unidecode

[machine]
pytz
tzlocal
tweepy
pyyaml>=5.1.0
click

[plot]
matplotlib

[reach_offline]
cython
pyjnius==1.1.4

[sbml]
python-libsbml

[sofia]
openpyxl

[trips_offline]
pykqml
