Metadata-Version: 2.4
Name: aced_submission
Version: 0.0.10rc14
Summary: Populate ACED commons from FHIR resources
Home-page: https://github.com/ACED-IDP/aced_submission
Author: compbio
Project-URL: Bug Reports, https://github.com/ACED-IDP/aced_submission/issues
Project-URL: Source, https://github.com/ACED-IDP/aced_submission
Keywords: gen3 bioinformatics
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.12, <4
Description-Content-Type: text/markdown
Requires-Dist: click
Requires-Dist: orjson
Requires-Dist: inflection
Requires-Dist: gen3
Requires-Dist: fhir.resources
Requires-Dist: PyJWT
Requires-Dist: python-magic
Requires-Dist: tqdm
Requires-Dist: requests
Requires-Dist: pydantic
Requires-Dist: joblib
Requires-Dist: beautifulsoup4
Requires-Dist: psycopg2-binary==2.9.7
Requires-Dist: opensearch-py==2.4.2
Requires-Dist: dictionaryutils
Requires-Dist: gen3datamodel<3.0.2
Dynamic: author
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: keywords
Dynamic: project-url
Dynamic: requires-dist
Dynamic: requires-python
Dynamic: summary

  
# submission

Utilities to upload metadata and files to ACED's Gen3 instance

## Setup

```
python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
pip install -e . 
```

## Use

see etl pod

## Distribution

- PyPi

```
# update pypi

# pypi credentials - see https://twine.readthedocs.io/en/stable/#environment-variables

export TWINE_USERNAME=  #  the username to use for authentication to the repository.
export TWINE_PASSWORD=  # the password to use for authentication to the repository.

# this could be maintained as so: export $(cat .env | xargs)

rm -r dist/
python3  setup.py sdist bdist_wheel
twine upload dist/*
```
