Metadata-Version: 2.1
Name: wopmars
Version: 0.1.0
Summary: Workflow Python Manager for Reproducible Science
Home-page: https://github.com/aitgon/wopmars
Author: "Aitor Gonzalez, Luc Giffon, Lionel Spinelli"
Author-email: "aitor.gonzalez@univ-amu.fr"
License: "MIT"
Download-URL: https://github.com/aitgon/wopmars/archive/0.1.0.tar.gz
Description: WopMars: Workflow Python Manager for Reproducible Science
        ======================================================================
        
        .. image:: https://img.shields.io/pypi/v/wopmars.svg
            :target: https://pypi.python.org/pypi/wopmars
        
        .. image:: https://img.shields.io/pypi/pyversions/wopmars.svg
            :target: https://www.python.org
        
        .. image:: https://readthedocs.org/projects/wopmars/badge/?version=latest
            :target: http://wopmars.readthedocs.io/en/latest/?badge=latest
        
        .. image:: https://travis-ci.org/aitgon/wopmars.svg?branch=master
            :target: https://travis-ci.org/aitgon/wopmars
        
        .. image:: https://codecov.io/gh/aitgon/wopmars/branch/master/graph/badge.svg
           :target: https://codecov.io/gh/aitgon/wopmars
        
        WopMars is a database-driven workflow manager written in python similar to GNU Makefile or Snakemake.
        The difference is that the definition file of WopMars takes into account input/output SQLITE table defined as python
        paths to SQLAlchemy models.
        
        You can install the latest WopMars version via "pypi":
        
        .. code-block:: bash
        
            pip install wopmars
        
        Run a quick example:
        
        .. code-block:: bash
        
            wopmars example
            cd example
            pip install -e .
            wopmars -D sqlite:///db.sqlite -w Wopfile.yml -v
        
        If there were not errors, you can look at the content of the sqlite db.
        
        .. code-block:: bash
        
            $ sqlite3 db.sqlite '.tables'
        
            Piece                            wom_TableInputOutputInformation
            PieceCar                         wom_TableModificationTime
            wom_Execution                    wom_ToolWrapper
            wom_FileInputOutputInformation   wom_TypeInputOrOutput
            wom_Option
        
            $ sqlite3 db.sqlite "select * from Piece limit 5"
        
            1|UC8T9P7D0F|wheel|664.24
            2|2BPN653B9D|engine|550.49
            3|T808AHY3DS|engine|672.09
            4|977FPG7QJZ|bodywork|667.23
            5|KJ6WPB3N56|engine|678.83
        
        The `WopMars documentation <http://wopmars.readthedocs.org/>`_ with user guide and
        API reference is hosted at Read The Docs.
        
        
Keywords: workflow manager python object-oriented reproducible science database framework
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Topic :: Database :: Front-Ends
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Software Development
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: Microsoft :: Windows :: Windows 10
Provides-Extra: pygraphviz
