.git-blame-ignore-revs
.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/documentation.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/plugin_preview.yml
.github/workflows/pytests.yml
.github/workflows/test_and_deploy.yml
docs/README.md
docs/__init__.py
docs/development-guide.md
docs/microscope-installation-guide.md
docs/napari-plugin-guide.md
docs/reconstruction-guide.md
docs/software-installation-guide.md
docs/images/HSV_legend.png
docs/images/JCh_Color_legend.png
docs/images/JCh_legend.png
docs/images/acq_diatoms2D.png
docs/images/acq_finished.png
docs/images/acquisition.png
docs/images/advanced.png
docs/images/bg_example.png
docs/images/calib_finished.png
docs/images/cap_bg.png
docs/images/connect_to_mm.png
docs/images/create_group.png
docs/images/create_group_voltage.png
docs/images/create_preset.png
docs/images/create_preset_voltage.png
docs/images/ideal_plot.png
docs/images/recOrder_Fig1_Overview.png
docs/images/recOrder_plugin_logo.png
docs/images/run_calib.png
docs/images/run_port.png
docs/images/tutorial_thumbnail.png
examples/recon-phase-from-bf.py
examples/recon-qlipp.py
recOrder/__init__.py
recOrder/_version.py
recOrder/napari.yaml
recOrder/acq/__init__.py
recOrder/acq/acq_functions.py
recOrder/acq/acquisition_workers.py
recOrder/calib/Calibration.py
recOrder/calib/Optimization.py
recOrder/calib/__init__.py
recOrder/calib/calibration_workers.py
recOrder/compute/__init__.py
recOrder/compute/qlipp_compute.py
recOrder/io/__init__.py
recOrder/io/_reader.py
recOrder/io/core_functions.py
recOrder/io/metadata_reader.py
recOrder/io/utils.py
recOrder/io/zarr_converter.py
recOrder/plugin/__init__.py
recOrder/plugin/gui.py
recOrder/plugin/gui.ui
recOrder/plugin/main_widget.py
recOrder/scripts/__init__.py
recOrder/scripts/cli.py
recOrder/scripts/launch_napari.py
recOrder/scripts/md5_check_sum.py
recOrder/scripts/repeat-cal-acq-rec.py
recOrder/scripts/repeat-calibration.py
recOrder/tests/conftest.py
recOrder/tests/calibration_tests/test_calibration.py
recOrder/tests/converter_tests/test_converter.py
recOrder/tests/mmcore_tests/test_core_func.py
recOrder_napari.egg-info/PKG-INFO
recOrder_napari.egg-info/SOURCES.txt
recOrder_napari.egg-info/dependency_links.txt
recOrder_napari.egg-info/entry_points.txt
recOrder_napari.egg-info/requires.txt
recOrder_napari.egg-info/top_level.txt