LICENSE.txt
MANIFEST.in
README.md
setup.py
pepars/__init__.py
pepars.egg-info/PKG-INFO
pepars.egg-info/SOURCES.txt
pepars.egg-info/dependency_links.txt
pepars.egg-info/requires.txt
pepars.egg-info/top_level.txt
pepars/alignment/Aligner.py
pepars/alignment/Bowtie_Aligner.py
pepars/alignment/Perfect_Match_Aligner.py
pepars/alignment/__init__.py
pepars/analysis/DNA.py
pepars/analysis/Label_Type.py
pepars/analysis/__init__.py
pepars/analysis/amino_acids.py
pepars/analysis/confidence.py
pepars/analysis/coverage.py
pepars/analysis/drop_seq.py
pepars/analysis/enrichment.py
pepars/analysis/heat.py
pepars/analysis/sequencing_reads.py
pepars/analysis/single_cell.py
pepars/analysis/statistics.py
pepars/fileio/__init__.py
pepars/fileio/csv_wrapper.py
pepars/fileio/fileio.py
pepars/fileio/merge_sequence_counts.py
pepars/fileio/sequence_data_parsing.py
pepars/plotting/DNA.py
pepars/plotting/__init__.py
pepars/plotting/plotting.py
pepars/simulation/__init__.py
pepars/simulation/simulation.py
pepars/utils/AminoAcid.py
pepars/utils/DNA.py
pepars/utils/Drop_Seq_Read.py
pepars/utils/FASTQ.py
pepars/utils/FASTQ_File.py
pepars/utils/FASTQ_File_Set.py
pepars/utils/Sequence_Trie.py
pepars/utils/__init__.py
pepars/utils/utils.py