LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.py
samestr/__init__.py
samestr/samestr
samestr.egg-info/PKG-INFO
samestr.egg-info/SOURCES.txt
samestr.egg-info/dependency_links.txt
samestr.egg-info/requires.txt
samestr.egg-info/top_level.txt
samestr/compare/__init__.py
samestr/compare/compare.py
samestr/convert/__init__.py
samestr/convert/bam2freq.py
samestr/convert/concatenate_gene_files.py
samestr/convert/dump_file.py
samestr/convert/filter_sam.py
samestr/convert/kp2np.py
samestr/convert/kpileup.py
samestr/convert/sam2bam.py
samestr/db/__init__.py
samestr/db/generate_db.py
samestr/db/metaphlan_tree.py
samestr/extract/__init__.py
samestr/extract/ref2freq.py
samestr/filter/__init__.py
samestr/filter/consensus.py
samestr/filter/filter_freqs.py
samestr/merge/__init__.py
samestr/merge/freq2freqs.py
samestr/stats/__init__.py
samestr/stats/alignment_stats.py
samestr/summarize/__init__.py
samestr/summarize/read_metaphlan_data.py
samestr/summarize/read_samestr_data.py
samestr/summarize/summarize.py
samestr/utils/__init__.py
samestr/utils/file_mapping.py
samestr/utils/ooSubprocess.py
samestr/utils/utilities.py
samestr/utils/which.py