AUTHORS
CMakeLists.txt
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
deeptime/__init__.py
deeptime/_version.py
deeptime/base.py
deeptime/base_torch.py
deeptime/basis/CMakeLists.txt
deeptime/basis/__init__.py
deeptime/basis/_base.py
deeptime/basis/_monomials.py
deeptime/basis/src/basis_bindings.cpp
deeptime/clustering/CMakeLists.txt
deeptime/clustering/__init__.py
deeptime/clustering/_box.py
deeptime/clustering/_cluster_model.py
deeptime/clustering/_kmeans.py
deeptime/clustering/_metric.py
deeptime/clustering/_regspace.py
deeptime/clustering/src/clustering_module.cpp
deeptime/covariance/__init__.py
deeptime/covariance/_covariance.py
deeptime/covariance/util/__init__.py
deeptime/covariance/util/_moments.py
deeptime/covariance/util/_running_moments.py
deeptime/covariance/util/covar_c/CMakeLists.txt
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deeptime/covariance/util/covar_c/covartools.py
deeptime/data/CMakeLists.txt
deeptime/data/__init__.py
deeptime/data/_bickley_simulator.py
deeptime/data/_birth_death_chain.py
deeptime/data/_datasets.py
deeptime/data/_double_well.py
deeptime/data/_drunkards_walk_simulator.py
deeptime/data/_ellipsoids.py
deeptime/data/_pbf_simulator.py
deeptime/data/_systems.py
deeptime/data/data/double_well_discrete.npz
deeptime/data/src/data_module.cpp
deeptime/decomposition/__init__.py
deeptime/decomposition/_cca.py
deeptime/decomposition/_dmd.py
deeptime/decomposition/_koopman.py
deeptime/decomposition/_kvad.py
deeptime/decomposition/_score.py
deeptime/decomposition/_tica.py
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deeptime/decomposition/deep/__init__.py
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deeptime/kernels/__init__.py
deeptime/kernels/_base.py
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deeptime/kernels/_kernels_torch.py
deeptime/markov/CMakeLists.txt
deeptime/markov/__init__.py
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deeptime/markov/_observables.py
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deeptime/markov/_reactive_flux.py
deeptime/markov/_transition_counting.py
deeptime/markov/_transition_matrix.py
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deeptime/markov/hmm/CMakeLists.txt
deeptime/markov/hmm/__init__.py
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deeptime/markov/hmm/_hidden_markov_model.py
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deeptime/markov/hmm/_util.py
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deeptime/markov/msm/tram/CMakeLists.txt
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deeptime/markov/tools/estimation/sparse/CMakeLists.txt
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deeptime/numeric/eig_qr.pyx
deeptime/numeric/src/numeric_module.cpp
deeptime/plots/CMakeLists.txt
deeptime/plots/__init__.py
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deeptime/sindy/__init__.py
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deeptime/src/CMakeLists.txt
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