MANIFEST.in
README.md
setup.py
swifr.egg-info/PKG-INFO
swifr.egg-info/SOURCES.txt
swifr.egg-info/dependency_links.txt
swifr.egg-info/entry_points.txt
swifr.egg-info/requires.txt
swifr.egg-info/top_level.txt
swifr_pkg/SWIFr.py
swifr_pkg/SWIFr_train.py
swifr_pkg/__init__.py
swifr_pkg/calibration.py
swifr_pkg/test_data/.DS_Store
swifr_pkg/test_data/SWIFr_train_seeds_rm_w1/classes.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w1/component_stats.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w1/dataset_info.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w1/full_seeds_dataset.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w1/classified/test_set.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w1/simulations/wheat_2/wheat_2.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w1/simulations/wheat_3/wheat_3.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w2/classes.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w2/component_stats.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w2/dataset_info.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w2/full_seeds_dataset.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w2/classified/test_set.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w2/simulations/wheat_1/wheat_1.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w2/simulations/wheat_3/wheat_3.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w3/classes.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w3/component_stats.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w3/dataset_info.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w3/full_seeds_dataset.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w3/classified/test_set.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w3/simulations/wheat_1/wheat_1.txt
swifr_pkg/test_data/SWIFr_train_seeds_rm_w3/simulations/wheat_2/wheat_2.txt
swifr_pkg/test_data/application_example/test_block_2classes
swifr_pkg/test_data/application_example/test_block_2classes_classified
swifr_pkg/test_data/application_example/test_block_3classes
swifr_pkg/test_data/application_example/test_block_3classes_classified
swifr_pkg/test_data/calibration/.DS_Store
swifr_pkg/test_data/calibration/example/IR_frac1=0.1.p
swifr_pkg/test_data/calibration/example/M_frac10.1.p
swifr_pkg/test_data/calibration/example/M_frac1=0.1.p
swifr_pkg/test_data/calibration/example/V_frac1=0.1.p
swifr_pkg/test_data/calibration/example/calibrated_reliability_frac1=0.1.pdf
swifr_pkg/test_data/calibration/example/test_for_application
swifr_pkg/test_data/calibration/example/test_for_application_calibrated
swifr_pkg/test_data/calibration/example/test_for_calibration.txt
swifr_pkg/test_data/calibration/example/uncalibrated_reliability_frac1=0.1.pdf
swifr_pkg/test_data/example_2classes/classes.txt
swifr_pkg/test_data/example_2classes/component_stats.txt
swifr_pkg/test_data/example_2classes/AODE_params/DDAF_neutral_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/DDAF_neutral_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/DDAF_sweep_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/DDAF_sweep_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_DDAF_neutral_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_DDAF_neutral_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_DDAF_sweep_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_DDAF_sweep_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_XP-EHH_neutral_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_XP-EHH_neutral_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_XP-EHH_sweep_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_XP-EHH_sweep_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_iHS_neutral_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_iHS_neutral_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_iHS_sweep_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_iHS_sweep_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_neutral_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_neutral_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_sweep_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/Fst_sweep_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_DDAF_neutral_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_DDAF_neutral_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_DDAF_sweep_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_DDAF_sweep_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_iHS_neutral_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_iHS_neutral_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_iHS_sweep_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_iHS_sweep_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_neutral_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_neutral_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_sweep_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/XP-EHH_sweep_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_DDAF_neutral_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_DDAF_neutral_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_DDAF_sweep_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_DDAF_sweep_tuples.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_neutral_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_neutral_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_sweep_1D_GMMparams.p
swifr_pkg/test_data/example_2classes/AODE_params/iHS_sweep_singles.p
swifr_pkg/test_data/example_2classes/AODE_params/joint_component_nums
swifr_pkg/test_data/example_2classes/AODE_params/marginal_component_nums
swifr_pkg/test_data/example_2classes/BIC_plots/DDAF_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/DDAF_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_DDAF_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_DDAF_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_XP-EHH_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_XP-EHH_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_iHS_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_iHS_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/Fst_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/XP-EHH_DDAF_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/XP-EHH_DDAF_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/XP-EHH_iHS_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/XP-EHH_iHS_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/XP-EHH_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/XP-EHH_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/iHS_DDAF_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/iHS_DDAF_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/iHS_neutral_BIC.pdf
swifr_pkg/test_data/example_2classes/BIC_plots/iHS_sweep_BIC.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/joints/Fst_DDAF_joint.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/joints/Fst_XP-EHH_joint.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/joints/Fst_iHS_joint.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/joints/XP-EHH_DDAF_joint.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/joints/XP-EHH_iHS_joint.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/joints/iHS_DDAF_joint.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/marginals/DDAF_marginal.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/marginals/Fst_marginal.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/marginals/XP-EHH_marginal.pdf
swifr_pkg/test_data/example_2classes/component_statistic_distributions/marginals/iHS_marginal.pdf
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