pymusepipe

• pymusepipe package
  • Submodules
  • pymusepipe.align_pipe module
    • AlignMuseDataset
      • AlignMuseDataset.apply_extra_offset_ima()
      • AlignMuseDataset.apply_optical_flow_offset_ima()
      • AlignMuseDataset.apply_optical_flow_offset_listima()
      • AlignMuseDataset.compare()
      • AlignMuseDataset.compare_ima()
      • AlignMuseDataset.find_cross_peak()
      • AlignMuseDataset.find_cross_peak_ima()
      • AlignMuseDataset.find_cross_peak_listima()
      • AlignMuseDataset.get_imaref_muse()
      • AlignMuseDataset.get_normfactor_ima()
      • AlignMuseDataset.get_shift_from_pcc()
      • AlignMuseDataset.get_shift_from_pcc_ima()
      • AlignMuseDataset.get_shift_from_pcc_listima()
      • AlignMuseDataset.init_guess_offset()
      • AlignMuseDataset.init_optical_flow()
      • AlignMuseDataset.init_optical_flow_ima()
      • AlignMuseDataset.init_optical_flow_listima()
      • AlignMuseDataset.iterate_on_optical_flow_ima()
      • AlignMuseDataset.iterate_on_optical_flow_listima()
      • AlignMuseDataset.offset_and_compare()
      • AlignMuseDataset.open_hdu()
      • AlignMuseDataset.open_offset_table()
      • AlignMuseDataset.print_images_names()
      • AlignMuseDataset.print_offsets_and_norms()
      • AlignMuseDataset.run_optical_flow()
      • AlignMuseDataset.run_optical_flow_ima()
      • AlignMuseDataset.save_fits_offset_table()
      • AlignMuseDataset.save_image()
      • AlignMuseDataset.save_polypar_ima()
      • AlignMuseDataset.show_linearfit_values()
      • AlignMuseDataset.show_norm_factors()
      • AlignMuseDataset.show_offset_fromfits()
      • AlignMuseDataset.show_offsets()
    • arcsec_to_pixel()
    • create_offset_table()
    • get_conversion_factor()
    • init_plot_optical_flow()
    • is_sequence()
    • pixel_to_arcsec()
    • rotate_pixtable()
    • rotate_pixtables()
  • pymusepipe.check_pipe module
    • CheckPipe
      • CheckPipe.check_given_images()
      • CheckPipe.check_master_bias_flat()
      • CheckPipe.check_quadrants()
      • CheckPipe.check_sky_spectra()
      • CheckPipe.check_white_line_images()
    • print_plot()
  • pymusepipe.combine module
    • MusePointings
      • MusePointings.create_all_pointings_wcs()
      • MusePointings.create_combined_wcs()
      • MusePointings.create_pointing_wcs()
      • MusePointings.create_reference_wcs()
      • MusePointings.extract_combined_narrow_wcs()
      • MusePointings.full_list_datasets
      • MusePointings.goto_folder()
      • MusePointings.goto_origfolder()
      • MusePointings.goto_prevfolder()
      • MusePointings.run_combine()
      • MusePointings.run_combine_all_single_pointings()
      • MusePointings.run_combine_single_pointing()
      • MusePointings.set_fullpath_names()
    • build_dict_exposures()
    • get_list_datasets()
    • get_list_exposures()
    • get_list_periods()
    • get_list_reduced_pixtables()
    • get_list_targets()
  • pymusepipe.config_pipe module
    • get_suffix_product()
  • pymusepipe.create_sof module
    • SofDict
    • SofPipe
      • SofPipe.write_sof()
  • pymusepipe.cube_convolve module
    • convolution_kernel()
    • convolution_kernel_gaussian()
    • cube_convolve()
    • cube_kernel()
    • gaussian_kernel()
    • moffat_kernel()
    • psf2d()
    • psf3d()
    • pypher_script()
  • pymusepipe.emission_lines module
    • print_emission_lines()
  • pymusepipe.graph_pipe module
    • GraphMuse
      • GraphMuse.close()
      • GraphMuse.plot_page()
      • GraphMuse.plot_set_images()
      • GraphMuse.plot_set_spectra()
      • GraphMuse.savepage()
      • GraphMuse.start_page()
    • open_new_wcs_figure()
    • plot_compare_contours()
    • plot_compare_cuts()
    • plot_compare_diff()
    • plot_polypar()
    • print_fig()
  • pymusepipe.init_musepipe module
    • InitMuseParameters
      • InitMuseParameters.init_default_param()
      • InitMuseParameters.read_param_file()
    • add_suffix_tokeys()
  • pymusepipe.mpdaf_pipe module
    • BasicFile
    • BasicPSF
      • BasicPSF.psf_array
    • MuseCube
      • MuseCube.astropy_convolve()
      • MuseCube.build_filterlist_images()
      • MuseCube.convolve_cube_to_psf()
      • MuseCube.create_reference_cube()
      • MuseCube.extract_onespectral_cube()
      • MuseCube.get_emissionline_image()
      • MuseCube.get_filter_image()
      • MuseCube.get_image_from_cube()
      • MuseCube.get_quadrant_spectra_from_cube()
      • MuseCube.get_set_spectra()
      • MuseCube.get_spectrum_from_cube()
      • MuseCube.get_whiteimage_from_cube()
      • MuseCube.mask_trail()
      • MuseCube.rebin_spatial()
      • MuseCube.save_mask()
    • MuseCubeMosaic
      • MuseCubeMosaic.build_list()
      • MuseCubeMosaic.convolve_cubes()
      • MuseCubeMosaic.cube_names
      • MuseCubeMosaic.list_cubes
      • MuseCubeMosaic.madcombine()
      • MuseCubeMosaic.ncubes
      • MuseCubeMosaic.print_cube_names()
    • MuseFilter
      • MuseFilter.read()
    • MuseImage
      • MuseImage.get_fwhm_startend()
      • MuseImage.mask_trail()
      • MuseImage.reset_mask()
      • MuseImage.save_mask()
    • MuseSetImages
      • MuseSetImages.update()
    • MuseSetSpectra
      • MuseSetSpectra.update()
    • MuseSkyContinuum
      • MuseSkyContinuum.get_normfactor()
      • MuseSkyContinuum.integrate()
      • MuseSkyContinuum.read()
      • MuseSkyContinuum.save_normalised()
    • MuseSpectrum
    • PixTableToMask
      • PixTableToMask.create_mask()
      • PixTableToMask.imshow()
      • PixTableToMask.mask_pixtable()
      • PixTableToMask.save_mask()
    • get_sky_spectrum()
    • integrate_spectrum()
  • pymusepipe.musepipe module
    • MusePipe
      • MusePipe.goto_folder()
      • MusePipe.goto_origfolder()
      • MusePipe.goto_prevfolder()
      • MusePipe.init_raw_table()
      • MusePipe.musemode
      • MusePipe.print_musemodes()
      • MusePipe.read_all_astro_tables()
      • MusePipe.read_astropy_table()
      • MusePipe.retrieve_geoastro_name()
      • MusePipe.save_expo_table()
      • MusePipe.set_fullpath_names()
      • MusePipe.sort_raw_tables()
    • PipeObject
  • pymusepipe.prep_recipes_pipe module
    • PipePrep
      • PipePrep.get_align_group()
      • PipePrep.print_recipes()
      • PipePrep.run_align_bydataset()
      • PipePrep.run_align_bygroup()
      • PipePrep.run_autocal_sky()
      • PipePrep.run_bias()
      • PipePrep.run_check_align()
      • PipePrep.run_combine_dataset()
      • PipePrep.run_fine_alignment()
      • PipePrep.run_flat()
      • PipePrep.run_lsf()
      • PipePrep.run_phangs_recipes()
      • PipePrep.run_prep_align()
      • PipePrep.run_recipes()
      • PipePrep.run_scibasic()
      • PipePrep.run_scibasic_all()
      • PipePrep.run_scipost()
      • PipePrep.run_scipost_perexpo()
      • PipePrep.run_scipost_sky()
      • PipePrep.run_sky()
      • PipePrep.run_standard()
      • PipePrep.run_twilight()
      • PipePrep.run_wave()
      • PipePrep.save_fine_alignment()
      • PipePrep.select_tpl_files()
    • add_listpath()
    • norm_listpath()
    • print_my_function_name()
  • pymusepipe.recipes_pipe module
    • PipeRecipes
      • PipeRecipes.checksum
      • PipeRecipes.esorex
      • PipeRecipes.joinprod()
      • PipeRecipes.merge
      • PipeRecipes.recipe_align()
      • PipeRecipes.recipe_bias()
      • PipeRecipes.recipe_combine()
      • PipeRecipes.recipe_combine_pointings()
      • PipeRecipes.recipe_flat()
      • PipeRecipes.recipe_lsf()
      • PipeRecipes.recipe_scibasic()
      • PipeRecipes.recipe_scipost()
      • PipeRecipes.recipe_sky()
      • PipeRecipes.recipe_std()
      • PipeRecipes.recipe_twilight()
      • PipeRecipes.recipe_wave()
      • PipeRecipes.run_oscommand()
      • PipeRecipes.write_errlogfile()
      • PipeRecipes.write_logfile()
      • PipeRecipes.write_outlogfile()
  • pymusepipe.target_sample module
    • MusePipeSample
      • MusePipeSample.combine_target()
      • MusePipeSample.combine_target_per_pointing()
      • MusePipeSample.convolve_mosaic_per_pointing()
      • MusePipeSample.create_reference_wcs()
      • MusePipeSample.finalise_reduction()
      • MusePipeSample.init_combine()
      • MusePipeSample.init_mosaic()
      • MusePipeSample.mosaic()
      • MusePipeSample.reduce_all_targets()
      • MusePipeSample.reduce_target()
      • MusePipeSample.reduce_target_postalign()
      • MusePipeSample.reduce_target_prealign()
      • MusePipeSample.rotate_pixtables_target()
      • MusePipeSample.run_target_recipe()
      • MusePipeSample.run_target_scipost_perexpo()
      • MusePipeSample.set_pipe_target()
    • MusePipeTarget
    • PipeDict
      • PipeDict.run_on_all_keys()
      • PipeDict.setdefault()
      • PipeDict.update()
    • insert_suffix()
    • update_calib_file()
  • pymusepipe.util_pipe module
    • Circle_Zone
      • Circle_Zone.select()
    • ExposureInfo
    • Rectangle_Zone
      • Rectangle_Zone.select()
    • Selection_Zone
    • TimeStampDict
      • TimeStampDict.create_new_timestamp()
      • TimeStampDict.delete_timestamp()
    • Trail_Zone
      • Trail_Zone.select()
    • abspath()
    • add_key_dataset_expo()
    • add_string()
    • analyse_musemode()
    • append_file()
    • chunk_stats()
    • create_time_name()
    • crop_data()
    • doppler_shift()
    • filter_list_with_pdict()
    • filter_list_with_suffix_list()
    • filtermed_image()
    • flatclean_image()
    • formatted_time()
    • get_dataset_name()
    • get_emissionline_band()
    • get_emissionline_wavelength()
    • get_flux_range()
    • get_normfactor()
    • get_polynorm()
    • get_tpl_nexpo()
    • lower_allbutfirst_letter()
    • lower_rep()
    • merge_dict()
    • my_linear_model()
    • normpath()
    • prepare_image()
    • print_debug()
    • print_endline()
    • print_error()
    • print_info()
    • print_warning()
    • reconstruct_filter_images()
    • regress_odr()
    • rotate_cube_wcs()
    • rotate_image_wcs()
    • safely_create_folder()
    • select_spaxels()
  • pymusepipe.version module
  • Module contents