LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
docs/Makefile
docs/basics.rst
docs/conf.py
docs/index.rst
docs/installation.rst
docs/interfaces.rst
docs/make.bat
docs/modules.rst
docs/reframed.alpha.rst
docs/reframed.cobra.rst
docs/reframed.community.rst
docs/reframed.core.rst
docs/reframed.external.rst
docs/reframed.io.rst
docs/reframed.rst
docs/reframed.solvers.rst
docs/simulation.rst
docs/_build/html/_images/reframed_logo.png
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
reframed/__init__.py
reframed.egg-info/PKG-INFO
reframed.egg-info/SOURCES.txt
reframed.egg-info/dependency_links.txt
reframed.egg-info/not-zip-safe
reframed.egg-info/requires.txt
reframed.egg-info/top_level.txt
reframed/alpha/__init__.py
reframed/alpha/fluxutils.py
reframed/alpha/gapMake.py
reframed/alpha/geneswitch.py
reframed/alpha/plotting.py
reframed/alpha/sampling.py
reframed/cobra/__init__.py
reframed/cobra/auxotrophy.py
reframed/cobra/ensemble.py
reframed/cobra/knockout.py
reframed/cobra/medium.py
reframed/cobra/plotting.py
reframed/cobra/simulation.py
reframed/cobra/thermodynamics.py
reframed/cobra/transcriptomics.py
reframed/cobra/variability.py
reframed/community/SteadyCom.py
reframed/community/__init__.py
reframed/community/model.py
reframed/community/solution.py
reframed/core/__init__.py
reframed/core/cbmodel.py
reframed/core/elements.py
reframed/core/environment.py
reframed/core/model.py
reframed/core/parser.py
reframed/core/transformation.py
reframed/external/__init__.py
reframed/external/cobrapy.py
reframed/external/escher.py
reframed/io/__init__.py
reframed/io/cache.py
reframed/io/sbml.py
reframed/solvers/__init__.py
reframed/solvers/cplex_solver.py
reframed/solvers/gurobi_solver.py
reframed/solvers/scip_solver.py
reframed/solvers/solution.py
reframed/solvers/solver.py
tests/__init__.py
tests/scip_carveme.py
tests/test_reframed.py
tests/data/e_coli_core.xml.gz
tests/data/iML1515.xml.gz
tests/data/model_cobra.xml.gz
tests/data/model_fbc2.xml.gz