MANIFEST.in
README.md
setup.py
Plascad.egg-info/PKG-INFO
Plascad.egg-info/SOURCES.txt
Plascad.egg-info/dependency_links.txt
Plascad.egg-info/entry_points.txt
Plascad.egg-info/requires.txt
Plascad.egg-info/top_level.txt
plas_cad/__init__.py
plas_cad/__main__.py
plas_cad/database/ARGsdb/ARGsDB.fasta
plas_cad/database/ARGsdb/ARGsDB.phr
plas_cad/database/ARGsdb/ARGsDB.pin
plas_cad/database/ARGsdb/ARGsDB.psq
plas_cad/database/ARGsdb/ARGsDB_des.txt
plas_cad/database/hmm_module/ATPase_hmm/MPFF_ATPase.hmm
plas_cad/database/hmm_module/ATPase_hmm/MPFG_ATPase.hmm
plas_cad/database/hmm_module/ATPase_hmm/MPFI_ATPase.hmm
plas_cad/database/hmm_module/ATPase_hmm/MPFT_ATPase.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBB.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBC.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBF.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBH.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBP.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBPB.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBQ.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBT.hmm
plas_cad/database/hmm_module/MOB_hmm/MOBV.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traC.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traE.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traH.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traK.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traL.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traN.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traU.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traV.hmm
plas_cad/database/hmm_module/MPFF_hmm/MPFF_traW.hmm
plas_cad/database/hmm_module/MPFG_hmm/MPFG_41.hmm
plas_cad/database/hmm_module/MPFG_hmm/MPFG_44.hmm
plas_cad/database/hmm_module/MPFG_hmm/MPFG_51.hmm
plas_cad/database/hmm_module/MPFG_hmm/MPFG_52.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traI.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traK.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traL.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traM.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traN.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traP.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traQ.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traR.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traW.hmm
plas_cad/database/hmm_module/MPFI_hmm/MPFI_traY.hmm
plas_cad/database/hmm_module/MPFT_hmm/MPFT_virB3.hmm
plas_cad/database/hmm_module/MPFT_hmm/MPFT_virB6.hmm
plas_cad/database/hmm_module/MPFT_hmm/MPFT_virB8.hmm
plas_cad/database/hmm_module/MPFT_hmm/MPFT_virB9.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_ATPase.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_T4CP_1.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_T4CP_2.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traC.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traE.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traH.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traK.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traL.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traN.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traU.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traV.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFF_traW.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFG_41.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFG_44.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFG_51.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFG_52.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFG_ATPase.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFG_T4CP_1.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFG_T4CP_2.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_ATPase.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_T4CP_1.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_T4CP_2.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traI.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traK.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traL.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traM.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traN.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traP.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traQ.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traR.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traW.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFI_traY.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFT_ATPase.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFT_T4CP_1.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFT_T4CP_2.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFT_virB3.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFT_virB6.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFT_virB8.hmm
plas_cad/database/hmm_module/MPF_system_hmm/MPFT_virB9.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFF_T4CP_1_.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFF_T4CP_2.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFG_T4CP_1.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFG_T4CP_2.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFI_T4CP_1.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFI_T4CP_2.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFT_T4CP_1.hmm
plas_cad/database/hmm_module/T4CP_hmm/MPFT_T4CP_2.hmm
plas_cad/example/example.fasta
plas_cad/scripts/Conj_mob_classification.py
plas_cad/scripts/Conj_parser.py
plas_cad/scripts/ElementTree_pretty.py
plas_cad/scripts/MOB_parser.py
plas_cad/scripts/MPF_hmm_parser.py
plas_cad/scripts/Plasmids_plot.py
plas_cad/scripts/plasmids_ARGs_parser.py
plas_cad/scripts/plasmids_result_summary.py
plas_cad/scripts/js/angularplasmid.complete.min.js