Metadata-Version: 2.1
Name: metabodirect
Version: 0.2.12
Summary: Analyze FT-ICR-MS data
Home-page: https://github.com/Coayala/MetaboDirect
Author: Christian Ayala
Author-email: cayalaortiz@email.arizona.edu
License: LICENSE
Description: # MetaboDirect
        A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data.
        
        ## Installation
        
        MetaboDirect can be installed directly from [PyPi](https://pypi.org/project/metabodirect/0.1.1/) using:
        
        ```
        pip install metabodirect
        ```
        
        Additionally it can be installed from source by cloning its [GitHub repository](https://github.com/Coayala/MetaboDirect)
        
        ```
        git clone https://github.com/Coayala/MetaboDirect.git
        cd MetaboDirect
        python setup.py install
        ```
        
        MetaboDirect requires Python (3.5 and above), R (4 and above) and Cytoscape (3.8 and above) with the following libraries/modules:
        
        ### Python
        
        - argparse
        - numpy
        - pandas
        - seaborn
        - more-itertools
        - py4cytoscape
        
        ### R
        
        - tidyverse
        - RColorBrewer
        - vegan
        - ggnewscale
        - ggpubr
        - vegan
        - KEGGREST
        - factoextra
        - UpSetR
        - pmartR (for normalization tests)
        - SYNCSA
        
        ### Cytoscape
        
        - FileTransfer
        
        ## Usage
        
        Information about the arguments can be obtaining using the option -h/--help
        
        ```
        metabodirect -h
        ```
        For more information please check the [User Manual](https://metabodirect.readthedocs.io/en/latest/index.html#).
        
        
        
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Description-Content-Type: text/markdown
