Metadata-Version: 2.1
Name: vivarium-core
Version: 0.0.4
Summary: UNKNOWN
Home-page: https://github.com/vivarium-collective/vivarium-core
Author: Eran Agmon, Ryan Spangler
Author-email: eagmon@stanford.edu, ryan.spangler@gmail.com
License: MIT
Description: # Vivarium
        
        Vivarium is a multiscale platform for simulating cells in dynamic
        environments, within which they can grow, divide, and thrive.
        
        ![vivarium](doc/_static/snapshots_fields.png)
        
        ## Documentation and Tutorials
        Visit [Vivarium documentation](https://wc-vivarium.readthedocs.io/)
        
        ## Concept
        
        A Vivarium is a "place of life" -- an enclosure for raising organisms in controlled environments for observation or 
        research. Typical vivaria include aquariums or terrariums.  The vivarium provided in this repository is a computational 
        vivarium for developing colonies of whole-cell model agents in dynamic environments. Its framework is a synthesis of 
        whole-cell modeling, agent-based modeling, multi-scale modeling, and modular programming.
        
        Vivarium is a framework for composing hybrid models of different cellular processes into agents, and placing many agents 
        into a shared spatial environment to observe their interactions. Vivarium is distributed in that these agents can run in 
        different threads or on different computers, and upon cell division new threads are allocated. The agents communicate 
        through message passing and are coordinated by the environmental simulation which receives all of the messages, 
        integrates them, and responds to each agent with their new updated local environments. 
Platform: UNKNOWN
Description-Content-Type: text/markdown
