Metadata-Version: 1.1
Name: pytcga
Version: 0.0.3
Summary: Store and query public TCGA data
Home-page: https://github.com/arahuja/pytcga
Author: Arun Ahuja
Author-email: aahuja11 {at} gmail {dot}
License: UNKNOWN
Description: pytcga
        ------
        
        Python library for accessing and processing public TCGA data
        
        Examples
        --------
        
        Loading Clinical Data
        ^^^^^^^^^^^^^^^^^^^^^
        
        .. code:: python
        
        
            import pytcga
        
            # Downloading and loading LUAD patient data
            clinical = pytcga.load_clinical_data('luad')
        
        Loading Mutation Data
        ^^^^^^^^^^^^^^^^^^^^^
        
        .. code:: python
        
            import pytcga
        
            # Downloading and loading LUAD mutations
            luad_mutations = \
                pytcga.load_mutation_data(disease_code='LUAD', with_clinical=False)
        
        
            # Also appends clinical data with `with_clinical` flag
            luad_mutations = \
                pytcga.load_mutation_data(disease_code='LUAD', with_clinical=True)
        
            # Filter variants with the `variant_type` argument
            # variant_type = {'all', 'indel', SNP', 'INS', 'DEL'}
            luad_indel_mutations = \
                pytcga.load_mutation_data(disease_code='LUAD', with_clinical=True, variant_type='indel')
        
        Loading RNASeq Data
        ^^^^^^^^^^^^^^^^^^^
        
        .. code:: python
        
            import pytcga
        
            # Downloading and loading LUAD mutations
            luad_rnaseq = \
                pytcga.load_rnaseq_data(disease_code='LUAD', with_clinical=True)
        
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
