MANIFEST.in
README.rst
setup.cfg
setup.py
./.build.yml
./.hgignore
./.hgsubtree
./.travis.yml
./CMakeLists.txt
./LEGAL.txt
./LICENSE.txt
./MANIFEST.in
./NOTICES.txt
./README.rst
./peru.yaml
./setup.cfg
./setup.py
./bindings/python/CMakeLists.txt
./bindings/python/bottleneck-distance.cpp
./bindings/python/chain.h
./bindings/python/cohomology-persistence.cpp
./bindings/python/cohomology-persistence.h
./bindings/python/diagram.cpp
./bindings/python/diagram.h
./bindings/python/dionysus.cpp
./bindings/python/field.cpp
./bindings/python/field.h
./bindings/python/filtration.cpp
./bindings/python/filtration.h
./bindings/python/freudenthal.cpp
./bindings/python/omni-field-persistence.cpp
./bindings/python/omni-field-persistence.h
./bindings/python/persistence.cpp
./bindings/python/persistence.h
./bindings/python/progress.h
./bindings/python/rips.cpp
./bindings/python/simplex.cpp
./bindings/python/simplex.h
./bindings/python/wasserstein-distance.cpp
./bindings/python/zigzag-persistence.cpp
./bindings/python/zigzag-persistence.h
./bindings/python/dionysus/__init__.py
./bindings/python/dionysus/_version.py
./bindings/python/dionysus/plot.py
./bindings/python/pybind11/CMakeLists.txt
./bindings/python/pybind11/LICENSE
./bindings/python/pybind11/include/pybind11/attr.h
./bindings/python/pybind11/include/pybind11/buffer_info.h
./bindings/python/pybind11/include/pybind11/cast.h
./bindings/python/pybind11/include/pybind11/chrono.h
./bindings/python/pybind11/include/pybind11/common.h
./bindings/python/pybind11/include/pybind11/complex.h
./bindings/python/pybind11/include/pybind11/eigen.h
./bindings/python/pybind11/include/pybind11/embed.h
./bindings/python/pybind11/include/pybind11/eval.h
./bindings/python/pybind11/include/pybind11/functional.h
./bindings/python/pybind11/include/pybind11/iostream.h
./bindings/python/pybind11/include/pybind11/numpy.h
./bindings/python/pybind11/include/pybind11/operators.h
./bindings/python/pybind11/include/pybind11/options.h
./bindings/python/pybind11/include/pybind11/pybind11.h
./bindings/python/pybind11/include/pybind11/pytypes.h
./bindings/python/pybind11/include/pybind11/stl.h
./bindings/python/pybind11/include/pybind11/stl_bind.h
./bindings/python/pybind11/include/pybind11/detail/class.h
./bindings/python/pybind11/include/pybind11/detail/common.h
./bindings/python/pybind11/include/pybind11/detail/descr.h
./bindings/python/pybind11/include/pybind11/detail/init.h
./bindings/python/pybind11/include/pybind11/detail/internals.h
./bindings/python/pybind11/include/pybind11/detail/typeid.h
./bindings/python/pybind11/tools/FindCatch.cmake
./bindings/python/pybind11/tools/FindEigen3.cmake
./bindings/python/pybind11/tools/FindPythonLibsNew.cmake
./bindings/python/pybind11/tools/pybind11Tools.cmake
./dionysus.egg-info/PKG-INFO
./dionysus.egg-info/SOURCES.txt
./dionysus.egg-info/dependency_links.txt
./dionysus.egg-info/not-zip-safe
./dionysus.egg-info/top_level.txt
./doc/API.rst
./doc/Makefile
./doc/conf.py
./doc/index.rst
./doc/tutorial/alpha-shapes.rst_
./doc/tutorial/basics.rst
./doc/tutorial/cohomology.rst
./doc/tutorial/diagnostics.rst
./doc/tutorial/filtrations.rst
./doc/tutorial/index.rst
./doc/tutorial/lower-star.rst
./doc/tutorial/omni-field.rst
./doc/tutorial/persistence.rst
./doc/tutorial/plotting.rst
./doc/tutorial/rips.rst
./doc/tutorial/zigzags.rst
./doc/tutorial/figures/alpha-shape.png
./doc/tutorial/figures/barcode.png
./doc/tutorial/figures/filtration.png
./doc/tutorial/figures/lower-star.png
./doc/tutorial/figures/vietoris-rips.png
./examples/CMakeLists.txt
./examples/filtration/CMakeLists.txt
./examples/filtration/filtration-persistence.cpp
./examples/filtration/zigzag-filtration-persistence.cpp
./examples/include/cnpy.h
./examples/include/common.h
./examples/include/format.h
./examples/include/format/format.cc
./examples/include/format/format.h
./examples/include/grid/box.h
./examples/include/grid/box.hpp
./examples/include/grid/grid.h
./examples/include/grid/point.h
./examples/include/grid/vertices.h
./examples/include/opts/opts.h
./examples/lzz/CMakeLists.txt
./examples/lzz/extended-persistence.cpp
./examples/lzz/grid-topology.h
./examples/lzz/relative-lzz.cpp
./examples/lzz/relative-lzz.h
./examples/lzz/relative-lzz.hpp
./examples/lzz/relative-zz-filtration.cpp
./examples/omni-field/CMakeLists.txt
./examples/omni-field/omni-field-persistence.cpp
./examples/rips/CMakeLists.txt
./examples/rips/rips-basic.cpp
./examples/rips/rips-pairwise.cpp
./examples/rips/rips-zigzag.cpp
./examples/src/cnpy.cpp
./ext/hera/license.txt
./ext/hera/bottleneck/CMakeLists.txt
./ext/hera/bottleneck/README
./ext/hera/bottleneck/example/CMakeLists.txt
./ext/hera/bottleneck/example/bottleneck_dist.cpp
./ext/hera/bottleneck/include/basic_defs_bt.h
./ext/hera/bottleneck/include/bottleneck.h
./ext/hera/bottleneck/include/bottleneck_detail.h
./ext/hera/bottleneck/include/bottleneck_detail.hpp
./ext/hera/bottleneck/include/bound_match.h
./ext/hera/bottleneck/include/bound_match.hpp
./ext/hera/bottleneck/include/def_debug_bt.h
./ext/hera/bottleneck/include/diagram_reader.h
./ext/hera/bottleneck/include/diagram_traits.h
./ext/hera/bottleneck/include/neighb_oracle.h
./ext/hera/bottleneck/include/catch/catch.hpp
./ext/hera/bottleneck/include/dnn/utils.h
./ext/hera/bottleneck/include/dnn/geometry/euclidean-fixed.h
./ext/hera/bottleneck/include/dnn/local/kd-tree.h
./ext/hera/bottleneck/include/dnn/local/kd-tree.hpp
./ext/hera/bottleneck/include/dnn/local/search-functors.h
./ext/hera/bottleneck/include/dnn/parallel/tbb.h
./ext/hera/bottleneck/include/dnn/parallel/utils.h
./ext/hera/wasserstein/CMakeLists.txt
./ext/hera/wasserstein/README
./ext/hera/wasserstein/example/wasserstein_dist.cpp
./ext/hera/wasserstein/example/wasserstein_dist_dipha.cpp
./ext/hera/wasserstein/example/wasserstein_dist_point_cloud.cpp
./ext/hera/wasserstein/include/auction_oracle.h
./ext/hera/wasserstein/include/auction_oracle_base.h
./ext/hera/wasserstein/include/auction_oracle_base.hpp
./ext/hera/wasserstein/include/auction_oracle_kdtree_pure_geom.h
./ext/hera/wasserstein/include/auction_oracle_kdtree_pure_geom.hpp
./ext/hera/wasserstein/include/auction_oracle_kdtree_restricted.h
./ext/hera/wasserstein/include/auction_oracle_kdtree_restricted.hpp
./ext/hera/wasserstein/include/auction_oracle_kdtree_single_diag.h
./ext/hera/wasserstein/include/auction_oracle_kdtree_single_diag.hpp
./ext/hera/wasserstein/include/auction_oracle_lazy_heap.h
./ext/hera/wasserstein/include/auction_oracle_lazy_heap.hpp
./ext/hera/wasserstein/include/auction_oracle_stupid_sparse_restricted.h
./ext/hera/wasserstein/include/auction_oracle_stupid_sparse_restricted.hpp
./ext/hera/wasserstein/include/auction_runner_fr.h
./ext/hera/wasserstein/include/auction_runner_fr.hpp
./ext/hera/wasserstein/include/auction_runner_gs.h
./ext/hera/wasserstein/include/auction_runner_gs.hpp
./ext/hera/wasserstein/include/auction_runner_gs_single_diag.h
./ext/hera/wasserstein/include/auction_runner_gs_single_diag.hpp
./ext/hera/wasserstein/include/auction_runner_jac.h
./ext/hera/wasserstein/include/auction_runner_jac.hpp
./ext/hera/wasserstein/include/basic_defs_ws.h
./ext/hera/wasserstein/include/basic_defs_ws.hpp
./ext/hera/wasserstein/include/def_debug_ws.h
./ext/hera/wasserstein/include/diagonal_heap.h
./ext/hera/wasserstein/include/diagram_reader.h
./ext/hera/wasserstein/include/hera_infinity.h
./ext/hera/wasserstein/include/wasserstein.h
./ext/hera/wasserstein/include/wasserstein_pure_geom.hpp
./ext/hera/wasserstein/include/catch/catch.hpp
./ext/hera/wasserstein/include/dnn/utils.h
./ext/hera/wasserstein/include/dnn/geometry/euclidean-dynamic.h
./ext/hera/wasserstein/include/dnn/geometry/euclidean-fixed.h
./ext/hera/wasserstein/include/dnn/local/kd-tree.h
./ext/hera/wasserstein/include/dnn/local/kd-tree.hpp
./ext/hera/wasserstein/include/dnn/local/search-functors.h
./ext/hera/wasserstein/include/dnn/parallel/tbb.h
./ext/hera/wasserstein/include/dnn/parallel/utils.h
./ext/hera/wasserstein/include/opts/opts.h
./ext/hera/wasserstein/include/spdlog/async_logger.h
./ext/hera/wasserstein/include/spdlog/common.h
./ext/hera/wasserstein/include/spdlog/formatter.h
./ext/hera/wasserstein/include/spdlog/logger.h
./ext/hera/wasserstein/include/spdlog/spdlog.h
./ext/hera/wasserstein/include/spdlog/tweakme.h
./ext/hera/wasserstein/include/spdlog/details/async_log_helper.h
./ext/hera/wasserstein/include/spdlog/details/async_logger_impl.h
./ext/hera/wasserstein/include/spdlog/details/file_helper.h
./ext/hera/wasserstein/include/spdlog/details/log_msg.h
./ext/hera/wasserstein/include/spdlog/details/logger_impl.h
./ext/hera/wasserstein/include/spdlog/details/mpmc_bounded_q.h
./ext/hera/wasserstein/include/spdlog/details/null_mutex.h
./ext/hera/wasserstein/include/spdlog/details/os.h
./ext/hera/wasserstein/include/spdlog/details/pattern_formatter_impl.h
./ext/hera/wasserstein/include/spdlog/details/registry.h
./ext/hera/wasserstein/include/spdlog/details/spdlog_impl.h
./ext/hera/wasserstein/include/spdlog/fmt/fmt.h
./ext/hera/wasserstein/include/spdlog/fmt/ostr.h
./ext/hera/wasserstein/include/spdlog/fmt/bundled/format.cc
./ext/hera/wasserstein/include/spdlog/fmt/bundled/format.h
./ext/hera/wasserstein/include/spdlog/fmt/bundled/ostream.cc
./ext/hera/wasserstein/include/spdlog/fmt/bundled/ostream.h
./ext/hera/wasserstein/include/spdlog/fmt/bundled/posix.cc
./ext/hera/wasserstein/include/spdlog/fmt/bundled/posix.h
./ext/hera/wasserstein/include/spdlog/fmt/bundled/time.h
./ext/hera/wasserstein/include/spdlog/sinks/android_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/ansicolor_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/base_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/dist_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/file_sinks.h
./ext/hera/wasserstein/include/spdlog/sinks/msvc_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/null_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/ostream_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/sink.h
./ext/hera/wasserstein/include/spdlog/sinks/stdout_sinks.h
./ext/hera/wasserstein/include/spdlog/sinks/syslog_sink.h
./ext/hera/wasserstein/include/spdlog/sinks/wincolor_sink.h
./include/backward.hpp
./include/dionysus/chain.h
./include/dionysus/chain.hpp
./include/dionysus/clearing-reduction.h
./include/dionysus/clearing-reduction.hpp
./include/dionysus/cohomology-persistence.h
./include/dionysus/cohomology-persistence.hpp
./include/dionysus/diagram.h
./include/dionysus/distances.h
./include/dionysus/distances.hpp
./include/dionysus/filtration.h
./include/dionysus/omni-field-persistence.h
./include/dionysus/omni-field-persistence.hpp
./include/dionysus/ordinary-persistence.h
./include/dionysus/pair-recorder.h
./include/dionysus/reduced-matrix.h
./include/dionysus/reduced-matrix.hpp
./include/dionysus/reduction.h
./include/dionysus/relative-homology-zigzag.h
./include/dionysus/relative-homology-zigzag.hpp
./include/dionysus/rips.h
./include/dionysus/rips.hpp
./include/dionysus/row-reduction.h
./include/dionysus/row-reduction.hpp
./include/dionysus/simplex.h
./include/dionysus/sparse-row-matrix.h
./include/dionysus/sparse-row-matrix.hpp
./include/dionysus/standard-reduction.h
./include/dionysus/standard-reduction.hpp
./include/dionysus/trails-chains.h
./include/dionysus/zigzag-persistence.h
./include/dionysus/zigzag-persistence.hpp
./include/dionysus/dlog/progress.h
./include/dionysus/fields/q.h
./include/dionysus/fields/z2.h
./include/dionysus/fields/zp.h
./src/backward.cpp
./tests/test_distances.py
./tests/test_issue39.py
./tests/data/issue39/dgm1.txt
./tests/data/issue39/dgm2.txt
bindings/python/dionysus/__init__.py
bindings/python/dionysus/_version.py
bindings/python/dionysus/plot.py
dionysus.egg-info/PKG-INFO
dionysus.egg-info/SOURCES.txt
dionysus.egg-info/dependency_links.txt
dionysus.egg-info/not-zip-safe
dionysus.egg-info/top_level.txt