CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
ScaffoldGraphNew.egg-info/PKG-INFO
ScaffoldGraphNew.egg-info/SOURCES.txt
ScaffoldGraphNew.egg-info/dependency_links.txt
ScaffoldGraphNew.egg-info/entry_points.txt
ScaffoldGraphNew.egg-info/requires.txt
ScaffoldGraphNew.egg-info/top_level.txt
scaffoldgraphnew/__init__.py
scaffoldgraphnew/network.py
scaffoldgraphnew/tree.py
scaffoldgraphnew/analysis/__init__.py
scaffoldgraphnew/analysis/diversity.py
scaffoldgraphnew/analysis/enrichment.py
scaffoldgraphnew/analysis/general.py
scaffoldgraphnew/analysis/representation.py
scaffoldgraphnew/core/__init__.py
scaffoldgraphnew/core/fragment.py
scaffoldgraphnew/core/graph.py
scaffoldgraphnew/core/scaffold.py
scaffoldgraphnew/io/__init__.py
scaffoldgraphnew/io/dataframe.py
scaffoldgraphnew/io/sdf.py
scaffoldgraphnew/io/smiles.py
scaffoldgraphnew/io/supplier.py
scaffoldgraphnew/io/tsv.py
scaffoldgraphnew/prioritization/__init__.py
scaffoldgraphnew/prioritization/generic_rules.py
scaffoldgraphnew/prioritization/original_rules.py
scaffoldgraphnew/prioritization/prioritization_rules.py
scaffoldgraphnew/prioritization/prioritization_ruleset.py
scaffoldgraphnew/prioritization/rule_io.py
scaffoldgraphnew/scripts/__init__.py
scaffoldgraphnew/scripts/generate.py
scaffoldgraphnew/scripts/misc.py
scaffoldgraphnew/scripts/operations.py
scaffoldgraphnew/scripts/run.py
scaffoldgraphnew/utils/__init__.py
scaffoldgraphnew/utils/aggregate.py
scaffoldgraphnew/utils/bipartite.py
scaffoldgraphnew/utils/cache.py
scaffoldgraphnew/utils/logging.py
scaffoldgraphnew/utils/misc.py
scaffoldgraphnew/vis/__init__.py
scaffoldgraphnew/vis/base.py
scaffoldgraphnew/vis/utils.py
scaffoldgraphnew/vis/notebook/__init__.py
scaffoldgraphnew/vis/notebook/cytoscape.py
tests/__init__.py
tests/test_network.py
tests/test_tree.py
tests/analysis/__init__.py
tests/analysis/test_enrichment.py
tests/analysis/test_general.py
tests/analysis/test_representation.py
tests/core/test_fragment.py
tests/core/test_graph.py
tests/core/test_scaffold.py
tests/data/test_smiles.smi
tests/prioritization/__init__.py
tests/prioritization/test_generic_rules.py
tests/prioritization/test_original_rules.py
tests/prioritization/test_prioritization_rules.py
tests/prioritization/test_prioritization_ruleset.py
tests/scripts/test_scripts.py
tests/utils/__init__.py
tests/utils/test_aggregate.py
tests/utils/test_bipartite.py
tests/utils/test_misc.py
tests/utils/test_subset.py
tests/vis/__init__.py
tests/vis/test_notebook.py
tests/vis/test_vis_utils.py