MANIFEST.in
README.md
setup.py
data/additionalMods.txt
data/modomics
data/tRNAmatureseq.cm
data/ce11-tRNAs/ce11-mitotRNAs.fa
data/ce11-tRNAs/ce11-tRNAs-detailed.out
data/ce11-tRNAs/ce11-tRNAs.bed
data/ce11-tRNAs/ce11-tRNAs.fa
data/ce11-tRNAs/ce11-tRNAs_name_map.txt
data/dm6-tRNAs/dm6-mitotRNAs.fa
data/dm6-tRNAs/dm6-tRNAs.bed
data/dm6-tRNAs/dm6-tRNAs.fa
data/dm6-tRNAs/dm6-tRNAs.out
data/dm6_eColitK/dm6-mitotRNAs.fa
data/dm6_eColitK/dm6-tRNAs.bed
data/dm6_eColitK/dm6_eColitK-tRNAs.fa
data/dm6_eColitK/dm6_eschColi-tRNAs.out
data/eschColi_K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.bed
data/eschColi_K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.fa
data/eschColi_K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.out
data/eschColi_K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.ss.sort
data/eschColi_K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs_name_map.txt
data/eschColi_tRNA_Lys/eschColi_K_12_MG1655-tRNAs.out
data/eschColi_tRNA_Lys/eschColi_modomics.fa
data/eschColi_tRNA_Lys/eschColi_tRNA_Lys.fa
data/hg19-tRNAs/hg19-mitotRNAs.fa
data/hg19-tRNAs/hg19-tRNAs.bed
data/hg19-tRNAs/hg19-tRNAs.fa
data/hg19-tRNAs/hg19-tRNAs.out.nohap
data/hg19-tRNAs/hg19-tRNAs.ss.sort
data/hg19_eColitK/hg19-mitotRNAs.fa
data/hg19_eColitK/hg19-tRNAs.bed
data/hg19_eColitK/hg19_eColitK.fa
data/hg19_eColitK/hg19_eschColi-tRNAs.out
data/hg19_eColitK-highConf-tRNAs/hg19-mitotRNAs.fa
data/hg19_eColitK-highConf-tRNAs/hg19-tRNAs.bed
data/hg19_eColitK-highConf-tRNAs/hg19-tRNAs.fa
data/hg19_eColitK-highConf-tRNAs/hg19_eschColi-tRNAs.out
data/mm10-tRNAs/mm10-mitotRNAs.fa
data/mm10-tRNAs/mm10-tRNAs.fa
data/mm10-tRNAs/mm10-tRNAs.out.filtered-noPseudo-noChrM
data/mm10_eColitK/mm10-mitotRNAs.fa
data/mm10_eColitK/mm10_eColitK-tRNAs.fa
data/mm10_eColitK/mm10_eschColi-tRNAs.out
data/sacCer3-Phe_SynVsPur/sacCer3-Phe.fa
data/sacCer3-Phe_SynVsPur/sacCer3-tRNAs.fa
data/sacCer3-Phe_SynVsPur/sacCer3-tRNAs.out-noChrM
data/sacCer3-tRNAs/sacCer3-mitotRNAs.fa
data/sacCer3-tRNAs/sacCer3-tRNAs.bed
data/sacCer3-tRNAs/sacCer3-tRNAs.fa
data/sacCer3-tRNAs/sacCer3-tRNAs.out-noChrM
data/sacCer3-tRNAs/sacCer3-tRNAs.ss.sort
data/sacCer3_eColitK/Turk_2013_mitotRNAbounds_Tab1.bed
data/sacCer3_eColitK/sacCer3-mitotRNAs.fa
data/sacCer3_eColitK/sacCer3-tRNAs.bed
data/sacCer3_eColitK/sacCer3_eschColi-tRNAs.out
data/sacCer3_eColitK/sacCer3_eschColitK.fa
data/schiPomb_972H/schiPomb-mitotRNAs.fa
data/schiPomb_972H/schiPomb_972H-tRNAs.bed
data/schiPomb_972H/schiPomb_972H-tRNAs.fa
data/schiPomb_972H/schiPomb_972H-tRNAs.out.noChrM
data/schiPomb_972H/schiPomb_972H-tRNAs.ss.sort
data/schiPomb_eColitK/schiPomb-mitotRNAs.fa
data/schiPomb_eColitK/schiPomb_972H-tRNAs.fa
data/schiPomb_eColitK/schiPomb_eschColi-tRNAs.out
docs/Makefile
docs/img/globular_multi.png
docs/img/method.png
docs/img/mimseq_ribbon.png
docs/img/mimseq_ribbonstruct_2.png
docs/source/conf.py
docs/source/contact.rst
docs/source/index.rst
docs/source/intro.rst
docs/source/output.rst
docs/source/start.rst
mim_seq/CCAanalysis.py
mim_seq/__init__.py
mim_seq/ccaPlots.R
mim_seq/coveragePlot.R
mim_seq/deseq.R
mim_seq/facet_share.R
mim_seq/getCoverage.py
mim_seq/mimseq.py
mim_seq/mmQuant.py
mim_seq/modPlot.R
mim_seq/modifications
mim_seq/splitClusters.py
mim_seq/ssAlign.py
mim_seq/tRNAmap.py
mim_seq/tRNAtools.py
mim_seq/version.py
mim_seq.egg-info/PKG-INFO
mim_seq.egg-info/SOURCES.txt
mim_seq.egg-info/dependency_links.txt
mim_seq.egg-info/not-zip-safe
mim_seq.egg-info/requires.txt
mim_seq.egg-info/top_level.txt