Metadata-Version: 1.1
Name: bamnostic
Version: 1.1.6
Summary: Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool
Home-page: https://github.com/betteridiot/bamnostic/
Author: Marcus D. Sherman
Author-email: mdsherm@umich.edu
License: BSD 3-Clause
Description: |Documentation Status| |Conda Version| |PyPI version| |Maintainability|
        
        |status| |DOI| |License|
        
        +----------+-------------------------+
        | Platform | Build Status            |
        +==========+=========================+
        | Linux    | |Build Status TravisCI| |
        +----------+-------------------------+
        | Windows  | |Build status Appveyor| |
        +----------+-------------------------+
        | conda    | |noarch|                |
        +----------+-------------------------+
        
        +-------+-------------------+
        | Host  | Downloads         |
        +=======+===================+
        | PyPI  | |Downloads|       |
        +-------+-------------------+
        | conda | |Conda Downloads| |
        +-------+-------------------+
        
        BAMnostic
        =========
        
        a *pure Python*, **OS-agnositic** Binary Alignment Map (BAM) file parser
        and random access tool.
        
        Note:
        ~~~~~
        
        Documentation can be found at `here`_ or by going to this address:
        http://bamnostic.readthedocs.io. Documentation was made available
        through `Read the Docs`_.
        
        --------------
        
        Installation
        ------------
        
        There are 4 methods of installation available (choose one):
        
        Through the ``conda`` package manager (`Anaconda Cloud`_)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        .. code:: bash
        
           # first, add the conda-forge channel to your conda build
           conda config --add channels conda-forge
        
           # now bamnostic is available for install
           conda install bamnostic
        
        Through the Python Package Index (`PyPI`_)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        .. code:: bash
        
           pip install bamnostic
        
           # or, if you don't have superuser access
           pip install --user bamnostic
        
        Through pip+Github
        ~~~~~~~~~~~~~~~~~~
        
        .. code:: bash
        
           # again, use --user if you don't have superuser access
           pip install -e git+https://github.com/betteridiot/bamnostic.git#egg=bamnostic
        
           # or, if you don't have superuser access
           pip install --user -e git+https://github.com/betteridiot/bamnostic.git#bamnostic#egg=bamnostic
        
        Traditiona
        ~~~~~~~~~~
        
        .. _here: http://bamnostic.readthedocs.io/en/latest/
        .. _Read the Docs: https://readthedocs.org/
        .. _Anaconda Cloud: https://anaconda.org/conda-forge/bamnostic
        .. _PyPI: https://pypi.org/
        
        .. |Documentation Status| image:: https://readthedocs.org/projects/bamnostic/badge/?version=latest
           :target: https://bamnostic.readthedocs.io/en/latest/?badge=latest
        .. |Conda Version| image:: https://img.shields.io/conda/vn/conda-forge/bamnostic.svg
           :target: https://anaconda.org/conda-forge/bamnostic
        .. |PyPI version| image:: https://badge.fury.io/py/bamnostic.svg
           :target: https://badge.fury.io/py/bamnostic
        .. |Maintainability| image:: https://api.codeclimate.com/v1/badges/d7e36e72f109c598c86d/maintainability
           :target: https://codeclimate.com/github/betteridiot/bamnostic/maintainability
        .. |status| image:: http://joss.theoj.org/papers/9952b35bbb30ca6c01e6a27b80006bd8/status.svg
           :target: http://joss.theoj.org/papers/9952b35bbb30ca6c01e6a27b80006bd8
        .. |DOI| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1341959.svg
           :target: https://doi.org/10.5281/zenodo.1341959
        .. |License| image:: https://img.shields.io/badge/License-BSD%203--Clause-blue.svg
           :target: https://github.com/betteridiot/bamnostic/blob/master/LICENSE
        .. |Build Status TravisCI| image:: https://travis-ci.org/betteridiot/bamnostic.svg?branch=master
           :target: https://travis-ci.org/betteridiot/bamnostic
        .. |Build status Appveyor| image:: https://ci.appveyor.com/api/projects/status/y95q02gkv3lgmlf4/branch/master?svg=true
           :target: https://ci.appveyor.com/project/betteridiot/bamnostic/branch/master
        .. |noarch| image:: https://img.shields.io/circleci/project/github/conda-forge/bamnostic-feedstock/master.svg?label=noarch
           :target: https://circleci.com/gh/conda-forge/bamnostic-feedstock
        .. |Downloads| image:: http://pepy.tech/badge/bamnostic
           :target: http://pepy.tech/project/bamnostic
        .. |Conda Downloads| image:: https://img.shields.io/conda/dn/conda-forge/bamnostic.svg
           :target: https://anaconda.org/conda-forge/bamnostic
Keywords: BAM pysam genomics genetics struct
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: End Users/Desktop
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Information Technology
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: Unix
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: MacOS
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.0
Classifier: Programming Language :: Python :: 3.1
Classifier: Programming Language :: Python :: 3.2
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Programming Language :: Python :: Implementation :: PyPy
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Information Analysis
