LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
src/CloudHummingbird.egg-info/PKG-INFO
src/CloudHummingbird.egg-info/SOURCES.txt
src/CloudHummingbird.egg-info/dependency_links.txt
src/CloudHummingbird.egg-info/entry_points.txt
src/CloudHummingbird.egg-info/requires.txt
src/CloudHummingbird.egg-info/top_level.txt
src/Hummingbird/README.md
src/Hummingbird/__init__.py
src/Hummingbird/backend.conf
src/Hummingbird/downsample.py
src/Hummingbird/hummingbird.py
src/Hummingbird/hummingbird_utils.py
src/Hummingbird/instance.py
src/Hummingbird/profiler.py
src/Hummingbird/scheduler.py
src/Hummingbird/AWS/Dockerfile
src/Hummingbird/AWS/README.md
src/Hummingbird/AWS/compute_environment.json
src/Hummingbird/AWS/fetch_and_run.sh
src/Hummingbird/AWS/job-defination.json
src/Hummingbird/AWS/launch-template-data.json
src/Hummingbird/Azure/Dockerfile
src/Hummingbird/Azure/README.md
src/Hummingbird/Azure/fetch_and_run.sh
src/Hummingbird/Azure/task.json
src/Hummingbird/conf/examples/atac.conf.json
src/Hummingbird/conf/examples/atac.task.conf.json
src/Hummingbird/conf/examples/atac.task.pct.conf.json
src/Hummingbird/conf/examples/atac.task.whole.conf.json
src/Hummingbird/conf/examples/bowtie.conf.json
src/Hummingbird/conf/examples/bqsr-ApplyBQSR.conf.json
src/Hummingbird/conf/examples/bqsr-BaseRecalibrator.conf.json
src/Hummingbird/conf/examples/bwa.aws.conf.json
src/Hummingbird/conf/examples/bwa.azure.conf.json
src/Hummingbird/conf/examples/bwa.conf.json
src/Hummingbird/conf/examples/fastqtoubam.json
src/Hummingbird/conf/examples/gatk.conf.json
src/Hummingbird/conf/examples/gatk_whole.conf.json
src/Hummingbird/conf/examples/haplotypecaller.cmd.conf.json
src/Hummingbird/conf/examples/haplotypecaller.conf.json
src/Hummingbird/conf/examples/mutect2.cmd.conf.json
src/Hummingbird/conf/examples/mutect2.conf.json
src/Hummingbird/conf/examples/mutect2.gatk4.conf.json
src/Hummingbird/conf/examples/picard-markdup.conf.json
src/Hummingbird/conf/examples/picard-sortsam.conf.json
src/Hummingbird/conf/examples/reheader.conf.json
src/Hummingbird/conf/examples/sample.conf.json
src/Hummingbird/conf/examples/trimming.json
src/Hummingbird/plot/__init__.py
src/Hummingbird/plot/plot.py