dandelion.plotting.clone_rarefaction

dandelion.plotting.clone_rarefaction(self, groupby, clone_key=None, palette=None, figsize=(6, 4), save=None)

Plots rarefaction curve for cell numbers vs clone size.

Parameters

• self (AnnData) – AnnData object.

• groupby (str) – Column name to split the calculation of clone numbers for a given number of cells for e.g. sample, patient etc.

• clone_key (str, optional) – Column name specifying the clone_id column in metadata/obs.

• palette (sequence, optional) – Color mapping for unique elements in groupby. Will try to retrieve from AnnData .uns slot if present.

• figsize (tuple[float, float]) – Size of plot.

• save (str, optional) – Save path.

Returns

Return type

rarefaction curve plot.